Workflows

Uniform Interface to Computing Resources1

Thomas Gruber1

Helmholtz Scientific Project Workflow Platform1 Intergalactic Workflow Commission (IWC)87 nf-core82 BioBB Building Blocks80 Australian BioCommons44 Workflows and Distributed Computing38 Galaxy Australia30 ERGA Assembly22 GalaxyProject SARS-CoV-221 usegalaxy-eu20 QCIF Bioinformatics20 Sydney Informatics Hub17 UNLOCK15 Galaxy Training Network13 NIH CFDE Playbook Workflow Partnership13 COMPSs Tutorials13 PNDB12 EuroScienceGateway11 eFlows4HPC general11 MGnify9 Galaxy Climate8 OME8 PerMedCoE8 IBISBA Workflows7 yPublish - Bioinfo tools7 Laserfarm applications to European demonstration sites7 CWL workflow SARS-CoV-26 Integrated and Urban Plant Pathology Laboratory6 EJPRD WP13 case-studies workflows6 HoloFood at MGnify6 Tree of Life Genome Analysis6 EGA6 IMBforge5 UX trial team5 iPC: individualizedPaediatricCure5 Specimen Data Refinery5 Cluster Emergent del Cervell Humà5 Seq4AMR5 Biodiversity Genomics Europe (general)5 NanoGalaxy4 SANBI Pathogen Bioinformatics4 Biodata Analysis Group4 Tree of Life Genome Assembly4 Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4 UFZ - Image Data Management and Processing Workflows4 SARS-CoV-2 Data Hubs3 Snakemake-Workflows3 ODA3 CO2MICS Lab3 EU-Openscreen3 TRON gGmbH3 TRE-FX3 Euro-BioImaging3 ERGA Annotation3 Scipion CNB3 BY-COVID (general)3 Chemical Data Lab3 NHM Clark group3 Proteomics CEITEC3 FAIR-EASE3 nf-core viralrecon2 V-Pipe2 EOSC-Life - Demonstrator 7: Rare Diseases2 Pawsey Supercomputing Research Centre2 SeBiMER2 Applied Computational Biology at IEG/HMGU2 INFRAFRONTIER workflows2 TransBioNet2 CRC Cohort2 Workflows Australia2 Medizinisches Proteom-Center, Medical Bioinformatics2 usegalaxy.be workflows2 Air Quality Prediction2 Read2Map2 ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2 KircherLab2 Apis-wings2 BioDT Use Case 4.1.1.2 Ecosystem services2 MISTIC2 BSC-CES2 Black Ochre Data Labs2 Workflows for geographic science2 Katdetectr2 ANSES-Ploufragan2 Pillar III: Urgent computing for natural hazards2 Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)2 CholGen2 Peter Menzel's Team2 Genome Data Compression Team2 RECETOX SpecDatRI2 BioImage Informatics and Analysis Workflows2 NMR Workflow1 COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1 Italy-Covid-data-Portal1 EOSC-Life-WP6-Demos1 EOSC-Life WP31 MOLGENIS1 Janis1 IAA-CSIC1 FAME1 CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1 HecatombDevelopment1 OpenEBench1 Bioinformatics and Biostatistics (BIO2 ) Core1 VIB Bioinformatics Core1 Single Cell Unit1 emo-bon1 CINECA1 Toxicology community1 Gyn Department1 AGRF BIO1 X-omics1 CAPSID1 Edinburgh Genomics1 NBIS1 BCCM_ULC1 Computational Science at HZDR1 Big data in biomedicine1 Guigó lab1 Statistical genetics1 Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1 Bioinformatics Unit @ CRG1 ELIXIR Proteomics1 IRRI Bioinformatics Group1 Zavolan Lab1 Metabolomics-Reproducibility1 NGFF Tools1 Bioinformatics workflows for life science1 BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection1 Lake Erken modelling setup1 EOSC-Life WP3 OC Team, cross RI project1 ARA-dev1 Mendel Centre for Plant Genomics and Proteomics1 WP5 - Volcanoes1 WP6 - Tsunamis1 Metagenomic tools1 Pillar I: Manufacturing1 Polygenic Score Catalog1 MLme: Machine Learning Made Easy1 Dioscuri TDA1 MMV-Lab1 EMBL-CBA1 EBP-Nor1 Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1 Pangenome database project1 HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1 Building spatio-temporal workflows in Galaxy1 CEMCOF1 Jackson Laboratory NGS-Ops1 BRAIN - Biomedical Research on Adult Intracranial Neoplasms1 Institute for Human Genetics and Genomic Medicine Aachen1 Plant-Food-Research-Open1 WGGC1 ELIXIR Metabolomics1 Medvedeva Lab1 16S rRNA Analysis1 Protein-protein and protein-nucleic acid binding site prediction research1 Culhane Lab1 IDUN - Drug Delivery and Sensing1 ErasmusMC Clinical Bioinformatics1 MAXOMOD1 NkuyfqLab1 bonohulab1 EnrichDO1 Application Security - Test Crypt4GH solutions1 RenLabBioinformatics1 National Computational Infrastructure (NCI) WorkflowHub team1 Into the deep1 CPM1 Research Data Management ICE-21 LiDAR1 Senckenberg Digital Collection and Biodiversity Information Technologies1 Astroparticle Lab1 QuackenbushLab1 Virus sequencing team1 SOS1 CSUbioinformatics1 More...

HELIPORT1