Workflows

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3 Workflows matching the given criteria: (Clear all filters)

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influenza-isolates-consensus-and-subtyping/main

Intergalactic Workflow Commission (IWC)

Tests All failing

This workflow performs subtyping and consensus sequence generation for batches of Illumina PE sequenced Influenza A isolates.

Type: Galaxy

Creators: Wolfgang Maier, Viktoria Isabel Schwarz

Submitter: WorkflowHub Bot

Created: 29th Jan 2025 at 03:01

sars-cov-2-pe-illumina-artic-ivar-analysis/SARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE

Intergalactic Workflow Commission (IWC)

Find and annotate variants in ampliconic SARS-CoV-2 Illumina sequencing data and classify samples with pangolin and nextclade

Type: Galaxy

Creators: Peter van Heusden, Peter van Heusden

Submitter: WorkflowHub Bot

Created: 31st Aug 2021 at 03:01, Last updated: 3rd Oct 2024 at 03:03

sars-cov-2-ont-artic-variant-calling/COVID-19-ARTIC-ONT

Intergalactic Workflow Commission (IWC)

Tests All failing

COVID-19: variation analysis on ARTIC ONT data

This workflow for ONT-sequenced ARTIC data is modeled after the alignment/variant-calling steps of the ARTIC pipeline. It performs, essentially, the same steps as that pipeline’s minion command, i.e. read mapping with minimap2 and variant calling with medaka. Like the Illumina ARTIC workflow it uses ivar for primer trimming. Since ONT-sequenced reads have a much ...

Type: Galaxy

Creator: Wolfgang Maier

Submitter: WorkflowHub Bot

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Created: 12th Mar 2021 at 13:41, Last updated: 21st Dec 2021 at 03:01

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COVID-19: variation analysis on ARTIC ONT data

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