Stable

Amplicon analysis workflow using NG-Tax

Inputs

ID Name Description Type
files file paths files to download string[]
destination IRODS final destination Final destination on iRODS string
forward_primer Forward primer Forward primer used string
reverse_primer Reverse primer Reverse primer used string
reference_db Reference database Reference database used in FASTA format string?
rev_read_len Reverse read length Read length of the reverse read int
for_read_len Reverse read length Read length of the reverse read int
sample Sample name Name of the sample being analysed string

Steps

ID Name Description
irods_download
fastqc
ngtax

Outputs

ID Name Description Type
fastqc_output n/a n/a Directory
ngtax_output n/a n/a Directory
help Creators and Submitter
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Submitter
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Views: 901   Downloads: 43

Created: 23rd Jul 2020 at 10:59

Last updated: 27th Nov 2020 at 07:55

Last used: 11th May 2021 at 03:43

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Version History

Version 7 (latest) Created 28th Oct 2020 at 11:07 by Jasper Koehorst

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