Galaxy

The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.

These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!

Analyse Bulk RNA-Seq data in preparation for downstream Pathways analysis with MINERVA

This portion of the workflow produces sets of feature Counts ready for analysis by limma/etc.

Analyse Bulk RNA-Seq data in preparation for downstream Pathways analysis with MINERVA

This workflow is created as part of a tutorial listed on GTN. The workflow shows the steps in human copy number variance detection using the Contrl_FREEC tool.

Genome-wide alternative splicing analysis v.2

Abstract CWL Automatically generated from the Galaxy workflow file: Copy of Genome-wide alternative splicing analysis

This workflow correspond to the Genome-wide alternative splicing analysis training. It allows to analyze isoform switching by making use of IsoformSwitchAnalyzeR.

To discover causal mutations of inherited diseases it’s common practice to do a trio analysis. In a trio analysis DNA is sequenced of both the patient and parents. Using this method, it’s possible to identify multiple inheritance patterns. Some examples of these patterns are autosomal recessive, autosomal dominant, and de-novo variants, which are represented in the figure below. To elaborate, the most left tree shows an autosomal dominant inhertitance pattern where the offspring inherits a faulty ...

Workflow for the GTN training "Antibiotic resistance detection"

The tutorial for this workflow can be found on Galaxy Training Network