Workflow for Spliced RNAseq data

Steps:

• workflow_quality.cwl:

• FastQC (Read Quality Control)

• fastp (Read Trimming)

• STAR (Read mapping)

• featurecounts (transcript read counts)

• kallisto (transcript [pseudo]counts)

RNA-RNA interactome analysis using ChiRA tools suite. The aligner used is CLAN.

RNA-RNA interactome analysis using ChiRA tools suite. The aligner used is BWA-MEM.

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control.