4 items tagged with 'rna'.
Work-in-progress
Workflow for Spliced RNAseq data Steps:
- workflow_quality.cwl:
- FastQC (Read Quality Control)
- fastp (Read Trimming)
- STAR (Read mapping)
- featurecounts (transcript read counts)
- kallisto (transcript [pseudo]counts)
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Stable
RNA-RNA interactome analysis using ChiRA tools suite. The aligner used is CLAN.
Stable
RNA-RNA interactome analysis using ChiRA tools suite. The aligner used is BWA-MEM.
Stable
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control.
