4 items tagged with 'rna'.
Work-in-progress
Workflow for Spliced RNAseq data
Steps:
workflow_quality.cwl:
FastQC (Read Quality Control)
fastp (Read Trimming)
STAR (Read mapping)
featurecounts (transcript read counts)
kallisto (transcript [pseudo]counts)
Created: 22nd Dec 2020 at 15:53
Stable
RNA-RNA interactome analysis using ChiRA tools suite. The aligner used is CLAN.
Created: 3rd Nov 2020 at 19:49
Stable
RNA-RNA interactome analysis using ChiRA tools suite. The aligner used is BWA-MEM.
Created: 3rd Nov 2020 at 19:46
Stable
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control.
Created: 22nd Jul 2020 at 11:58