2 items tagged with 'imaging'.
Work-in-progress
BatchConvert
A command line tool for converting image data into either of the standard file formats OME-TIFF or OME-Zarr.
The tool wraps the dedicated file converters bfconvert and bioformats2raw to convert into OME-TIFF or OME-Zarr, respectively. The workflow management system NextFlow is used to perform conversion in parallel for batches of images.
The tool also wraps s3 and Aspera clients (go-mc and aspera-cli, respectively). Therefore, input and output locations can be specified as local ...
Created: 10th Apr 2023 at 11:40, Last updated: 27th Apr 2023 at 12:21
Views: 293, Downloads: 0
Workflow for tracking objects in Cell Profiler: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/object-tracking-using-cell-profiler/tutorial.html
Created: 21st Mar 2021 at 18:12, Last updated: 21st Mar 2021 at 18:12
Views: 2572, Downloads: 23