4 items tagged with 'VGP_curated'.
No description specified
Created: 8th Nov 2023 at 03:01, Last updated: 24th Nov 2023 at 03:02
Views: 215, Downloads: 27
Scaffolding with Bionano
Scaffolding using Bionano optical map data
Inputs
- Bionano data [cmap]
- Estimated genome size [txt]
- Phased assembly generated by Hifiasm [gfa1]
Outputs
- Scaffolds
- Non-scaffolded contigs
- QC: Assembly statistics
- QC: Nx plot
- QC: Size plot
Created: 4th Nov 2023 at 03:02, Last updated: 16th Nov 2023 at 03:01
Views: 202, Downloads: 28
Purge contigs marked as duplicates by purge_dups (could be haplotypic duplication or overlap duplication). This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps (Workflow 3, 4, or 5)
Created: 31st Oct 2023 at 03:02, Last updated: 24th Nov 2023 at 03:02
Views: 299, Downloads: 67
Scaffolding using HiC data with YAHS.
Created: 27th Oct 2023 at 03:01, Last updated: 24th Nov 2023 at 03:02
Views: 302, Downloads: 71