Workflows

What is a Workflow?
540 Workflows visible to you, out of a total of 582
Work-in-progress

workflow License: Apache-2.0 DOI

Logo

Bactria: BarCode TRee Inference

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Type: Snakemake

Creators: None

Submitter: Rutger Vos

Stable

CLAWS (CNAG's Long-read Assembly Workflow in Snakemake)

Snakemake Pipeline used for de novo genome assembly @CNAG. It has been developed for Snakemake v6.0.5.

It accepts Oxford Nanopore Technologies (ONT) reads, PacBio HFi reads, illumina paired-end data, illumina 10X data and Hi-C reads. It does the preprocessing of the reads, assembly, polishing, purge_dups, scaffodling and different evaluation steps. By default it will preprocess the reads, run Flye + Hypo + purge_dups + yahs and evaluate ...

Type: Snakemake

Creators: Jessica Gomez-Garrido, Fernando Cruz (CNAG), Francisco Camara (CNAG), Tyler Alioto (CNAG)

Submitter: Jessica Gomez-Garrido

DOI: 10.48546/workflowhub.workflow.567.2

Stable

 

Welcome to the pipesnake. Let's get started.


Introduction

pipesnake is a bioinformatics best-practice analysis pipeline for phylogenomic reconstruction starting from short-read 'second-generation' sequencing data.

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity ...

Type: Nextflow

Creators: Ziad Al-Bkhetan, Ian Brennan

Submitter: Ziad Al-Bkhetan

Workflow for Creating a large disease network from various datasets and databases for IBM, and applying the active subnetwork identification method MOGAMUN.

Type: Common Workflow Language

Creators: Daphne Wijnbergen, Mridul Johari

Submitter: Daphne Wijnbergen

DOI: 10.48546/workflowhub.workflow.681.7

Run velocyto to get loom with counts of spliced and unspliced. It will extract the 'barcodes' from the bundled outputs.

Type: Galaxy

Creator: Lucille Delisle

Submitter: WorkflowHub Bot

Stable

Lysozyme in water sample COMPSs application

Type: COMPSs

Creator: Rosa M. Badia

Submitter: Raül Sirvent

Stable

Cluster Comparison COMPSs application

Type: COMPSs

Creators: Rosa M. Badia, Adam Hospital

Submitter: Raül Sirvent

Stable

Cholesky factorisation COMPSs application

Type: COMPSs

Creators: Rosa M. Badia, Adam Hospital

Submitter: Raül Sirvent

Stable

K-means COMPSs application

Type: COMPSs

Creators: Rosa M. Badia, Adam Hospital

Submitter: Raül Sirvent

Stable

Wordcount reduce version COMPSs application

Type: COMPSs

Creators: Rosa M. Badia, Adam Hospital

Submitter: Raül Sirvent

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