What is a Workflow?
394 Workflows visible to you, out of a total of 430

Rbbt implementation of the Covid-19 pilot workflow from the Personalized Medicine Center of Excellence.

This workflow processes single cell data to personalize boolean models that are then used in a multi-scale cellular simulation using PhysiBoSS.

Type: Rbbt

Creators: None

Submitter: Miguel Vazquez


COVID-19 Multiscale Modelling of the Virus and Patients’ Tissue Workflow

Table of Contents

Type: COMPSs

Creator: Javier Conejero

Submitter: Miguel Vazquez



Pipeline to recover eukaryotic MAGs using CONCOCT, metaBAT2 and EukCC's merging algorythm.

Needs paired end shotgun metagenomic reads.


Eukrecover requires an environment with snakemake and metaWRAP.


Define your samples in the file samples.csv. This file needs to have the columns project and run to identify each metagenome.

This pipeline does not support co-binning, but feel free to change it.

Clone this repro wherever you want to run the pipeline:


Type: Snakemake

Creators: None

Submitter: Varsha Kale

The radiation source ELBE (Electron Linac for beams with high Brilliance and low Emittance) at the Helmholtz Centre Dresden Rossendorf (HZDR) can produce several kinds of secondary radiations. THz radiation is one of them and can be used with a typical pulse frequency of 100 kHz as a stimulation source for elementary low-energy degrees of freedom in matter. To sample the whole THz wave the laser path length is modified by moving specific mirrors. The raw data contains for each mirror position a ...

Type: Uniform Interface to Computing Resources

Creators: None

Submitter: Thomas Gruber


This workflow correspond to the Genome-wide alternative splicing analysis training. It allows to analyze isoform switching by making use of IsoformSwitchAnalyzeR.


metaGOflow: A workflow for marine Genomic Observatories' data analysis


An EOSC-Life project

The workflows developed in the framework of this project are based on pipeline-v5 of the MGnify resource.

This branch is a child of the pipeline_5.1 branch that contains all CWL descriptions of the MGnify ...

Type: Common Workflow Language

Creators: Haris Zafeiropoulos, Martin Beracochea

Submitter: Haris Zafeiropoulos

DOI: 10.48546/workflowhub.workflow.384.3

hutch-workflow executes rquest in one shot.

Type: Common Workflow Language

Creator: Vasiliki Panagi

Submitter: Stian Soiland-Reyes

DOI: 10.48546/workflowhub.workflow.471.1

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