Workflows

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245 Workflows visible to you, out of a total of 260
VGP purge assembly with purge_dups pipeline
usegalaxy-eu
Work-in-progress

Purge Phased assembly of duplications and overlaps. Include purge steps for Primary and Alternate assemblies.

Type: Galaxy

Creator: Delphine Lariviere

Submitter: Cristóbal Gallardo

VGP HiFi phased assembly with hifiasm and HiC data
usegalaxy-eu
Work-in-progress

Performs Long Read assembly using PacBio data and Hifiasm. Part of VGP assembly pipeline. This workflow generate a phased assembly.

Type: Galaxy

Creator: Delphine Lariviere

Submitter: Cristóbal Gallardo

VGP genome profile analysis
usegalaxy-eu
Work-in-progress

Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.

Type: Galaxy

Creator: Delphine Lariviere

Submitter: Cristóbal Gallardo

V-pipe (main multi-virus version)
V-Pipe
Stable

Logo

bio.tools Snakemake Deploy Docker image ...

Type: Snakemake

Creators: Ivan Topolsky, Kim Philipp Jablonski

Submitter: Ivan Topolsky

(old) SARS-COV2 version of the V-Pipe workflow
V-Pipe

A version of V-pipe (analysis of next generation sequencing (NGS) data from viral pathogens) specifically adapted to analyze high-throughput sequencing data of SARS-CoV-2.

Type: Snakemake

Creators: Ivan Topolsky, Susana Posada Céspedes, Niko Beerenwinkel,

Submitter: Hervé Ménager

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eQTL-Catalogue/qtlmap
CINECA

eQTL-Catalogue/qtlmap

Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

Introduction

eQTL-Catalogue/qtlmap is a bioinformatics analysis pipeline used for QTL Analysis.

The workflow takes phenotype count matrix (normalized and quality controlled) and genotype data as input, and finds associations between them with the help of sample metadata and phenotype metadata files (See Input formats and preparation for required input ...

Type: Nextflow

Creators: None

Submitter: Kaur Alasoo

Galaxy ABC MD Setup tutorial
BioBB Building Blocks
Stable

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building Blocks library ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

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