COSIFER
Version 1

Workflow Type: Common Workflow Language
Stable

COnSensus Interaction Network InFErence Service

Inference framework for reconstructing networks using a consensus approach between multiple methods and data sources.

alt text

Reference

Manica, Matteo, Charlotte, Bunne, Roland, Mathis, Joris, Cadow, Mehmet Eren, Ahsen, Gustavo A, Stolovitzky, and María Rodríguez, Martínez. "COSIFER: a python package for the consensus inference of molecular interaction networks".Bioinformatics (2020).

Click and drag the diagram to pan, double click or use the controls to zoom.

Inputs

ID Name Description Type
data_matrix n/a Gene expression data matrix
  • File
gmt_filepath n/a Optional GMT file to perform inference on multiple gene sets
  • File?
index_col n/a Column index in the data. Defaults to None, a.k.a., no index
  • int?
outdir n/a Path to the output directory
  • string
separator n/a Separator for the data. Defaults to .
  • string?
samples_on_rows n/a Flag that indicates that data contain the samples on rows. Defaults to False.
  • boolean?

Steps

ID Name Description
cosifer n/a n/a

Outputs

ID Name Description Type
resdir n/a n/a
  • Directory

Version History

Version 1 (earliest) Created 5th May 2021 at 16:50 by Laura Rodriguez-Navas

No revision comments

Frozen Version-1 1632c07
help Creators and Submitter
Activity

Views: 3569   Downloads: 114

Created: 5th May 2021 at 16:50

Last updated: 21st Apr 2023 at 11:50

help Attributions

None

Total size: 926 Bytes
Powered by
(v.1.14.1)
Copyright © 2008 - 2023 The University of Manchester and HITS gGmbH