COSIFER
Version 1

Stable

COnSensus Interaction Network InFErence Service

Inference framework for reconstructing networks using a consensus approach between multiple methods and data sources.

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Reference

Manica, Matteo, Charlotte, Bunne, Roland, Mathis, Joris, Cadow, Mehmet Eren, Ahsen, Gustavo A, Stolovitzky, and María Rodríguez, Martínez. "COSIFER: a python package for the consensus inference of molecular interaction networks".Bioinformatics (2020).

Inputs

ID Name Description Type
data_matrix n/a Gene expression data matrix File
gmt_filepath n/a Optional GMT file to perform inference on multiple gene sets File?
index_col n/a Column index in the data. Defaults to None, a.k.a., no index int?
outdir n/a Path to the output directory string
separator n/a Separator for the data. Defaults to . string?
samples_on_rows n/a Flag that indicates that data contain the samples on rows. Defaults to False. boolean?

Steps

ID Name Description
cosifer

Outputs

ID Name Description Type
resdir n/a n/a Directory
help Creators and Submitter
Activity

Views: 112   Downloads: 6

Created: 5th May 2021 at 16:50

Last updated: 5th May 2021 at 16:50

Last used: 23rd Jun 2021 at 21:44

help Attributions

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Version History

Version 1 Created 5th May 2021 at 16:50 by Laura Rodriguez-Navas

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