COSIFER Version 1
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Download RO CrateCOnSensus Interaction Network InFErence Service
Inference framework for reconstructing networks using a consensus approach between multiple methods and data sources.
Reference
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| data_matrix | n/a | Gene expression data matrix |
|
| gmt_filepath | n/a | Optional GMT file to perform inference on multiple gene sets |
|
| index_col | n/a | Column index in the data. Defaults to None, a.k.a., no index |
|
| outdir | n/a | Path to the output directory |
|
| separator | n/a | Separator for the data. Defaults to . |
|
| samples_on_rows | n/a | Flag that indicates that data contain the samples on rows. Defaults to False. |
|
Steps
| ID | Name | Description |
|---|---|---|
| cosifer | n/a | n/a |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| resdir | n/a | n/a |
|
Version History
Version 1 (earliest) Created 5th May 2021 at 16:50 by Laura Rodriguez-Navas
Frozen
Version-11632c07
Creators and Submitter
Views: 2568 Downloads: 43
Created: 5th May 2021 at 16:50
Last updated: 21st Apr 2023 at 11:50
AttributionsNone
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Organizations: Barcelona Supercomputing Center (BSC-CNS), ELIXIR
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