3: Plant virus exploration
Version 1

Stable

Just the cleaning then assembly of all reads. TO explore further follow one of the paths described in "Global view" (WF 0)

Inputs

ID Name Description Type
single_paired single_paired runtime parameter for tool fastp n/a
single_paired single_paired runtime parameter for tool fastp n/a

Steps

ID Name Description
0 fastp: clean reads toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0
1 Shovill toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy0

Outputs

ID Name Description Type
out1 out1 n/a input
out2 out2 n/a input
report_html report_html n/a html
shovill_std_log shovill_std_log n/a txt
contigs contigs n/a fasta
contigs_graph contigs_graph n/a txt
help Creators and Submitter
Creators
Not specified
Submitter
Activity

Views: 82   Downloads: 3

Created: 4th Feb 2021 at 09:11

Last updated: 4th Feb 2021 at 09:12

Last used: 3rd Mar 2021 at 20:15

help Attributions

None

Version History

Version 1 Created 4th Feb 2021 at 09:11 by johan Rollin

No revision comments

Related items

Powered by
(v.1.10.2)
Copyright © 2008 - 2020 The University of Manchester and HITS gGmbH