Workflow Type: Nextflow
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Implementation of the IMPaCT-Data quality control workflow for WES data in nf-core/sarek workflow. Sarek is an analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing.
Version History
IMPaCT-Data QC + sarek (master @ 81c1fc9) (latest) Created 25th Jun 2024 at 07:53 by Arnau Soler Costa
Update README.md
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IMPaCT-Data QC + sarek (master @ fc7059f) Created 12th Jun 2024 at 14:11 by Arnau Soler Costa
Update workflow citation
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IMPaCT-data QC + sarek (master @ fc7059f) (earliest) Created 5th Jun 2024 at 16:05 by Arnau Soler Costa
Upload of the IMPaCT QC workflow
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![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Creators
Additional credit
All the Sarek team, nf-core comunity and people in the IMPaCT-data project.
Submitter
Citation
Soler Costa, A., & Curwin, A. (2024). IMPaCT-data quality control workflow implementation in nf-core/Sarek. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.1030.1
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Activity
Views: 769 Downloads: 272
Created: 5th Jun 2024 at 16:05
Last updated: 25th Jun 2024 at 08:30
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)