Workflows

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738 Workflows visible to you, out of a total of 793
Population and community metrics calculation from Biodiversity data
Stable

Galaxy-E (ecology.usegalaxy.eu) workflow to calculate species presence / absence, community metrics and compute generalized linear models to identify effects and significativity of these effects on biodiversity.

Type: Galaxy

Creators: Yvan Le Bras, Coline Royaux

Submitter: Yvan Le Bras

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RATECE-PLANICA ski station (Slovenia) under CMIP-6 SSP585 condition
Work-in-progress

Description: SSP-based RCP scenario with high radiative forcing by the end of century. Following approximately RCP8.5 global forcing pathway with SSP5 socioeconomic conditions. Concentration-driven. Rationale: the scenario represents the high end of plausible future pathways. SSP5 is the only SSP with emissions high enough to produce the 8.5 W/m2 level of forcing in 2100.

This workflow is answering to the following scientific question:

  • Is it worth investing in artificial snowmaking equipment ...

Type: Jupyter

Creators: None

Submitter: Anne Fouilloux

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Copernicus Essential Climate Variable - select and plot
Work-in-progress

Abstract CWL Automatically generated from the Galaxy workflow file: Workflow with Copernicus Essential Climate Variable - select and plot

Type: Galaxy

Creators: None

Submitter: Anne Fouilloux

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Climate - Climate 101
Stable

The tutorial for this workflow can be found on Galaxy Training Network

Type: Galaxy

Creator: Anne Fouilloux

Submitter: Bert Droesbeke

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NMR pipe
Work-in-progress

CWL workflow for NMR spectra Peak Picking The workflow takes as input a series of 2D 1H 15N HSQC NMR spectra and uses nmrpipe tools to convert the spectra in nmrpipe format and performs an automatic peak picking. This test uses a protein MDM2 with different ligands and peptide and generates a peak list with 1H and 15N chemical shift values for each spectrum. The difference among these peak lists can be used to characterize the ligand binding site on the protein.

Type: Common Workflow Language

Creators: None

Submitter: Andrea Giachetti

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Assembly using Tophat2 and annotation (alternate)
Stable

Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

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Unicycler assembly and annotation
Stable

Alignment, assembly RNASEQ reads and annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

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StringTie assembly and annotation
Stable

Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

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Assembly using Tophat2 and annotation
Stable

Alignment, assembly and annotation of generated transcripts from RNASEQ reads.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

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Virus genome assembly with Unicycler and Spades.
Stable

Virus genome assembly with Unicycler and Spades, The 2 assemblers works in parallel. The graph visualization is made with Bandage. workflow git repository : https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2/blob/master/Assembly/workflow/assembly-wf-virus.cwl Based on https://github.com/galaxyproject/SARS-CoV-2/blob/master/genomics/2-Assembly/as_wf.png

Type: Common Workflow Language

Creators: None

Submitter: francois moreews

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