Workflows

MultiQC73 SAMtools67 FastQC65 fastp55 BUSCO37 BWA36 Bowtie 234 Minimap234 anndata30 BEDTools27 Cutadapt27 SCANPY25 BCFtools24 ggplot222 Bandage21 kraken221 BLAST20 QUAST20 taxonomy_krona_chart18 gfastats17 MACS16 Merqury16 Trimmomatic16 JBrowse15 STAR15 Bwa-mem214 FASTX-Toolkit14 gffread14 seqtk14 SRA Software Toolkit14 Trim Galore14 FreeBayes13 NanoPlot13 scikit-learn13 BamTools12 Flye12 GenomeScope 2.012 StringTie12 mothur11 scikit-image11 DeepTools10 DESeq210 Galaxy Image Analysis10 HISAT210 lofreq10 msConvert10 Open Babel10 Biopython9 MaxQuant9 Stacks9 UniProt9 bx-python8 MAFFT8 QualiMap8 R8 RSeQC8 shovill8 snpEff8 Unicycler8 Bracken7 Galaxy7 MaBoSS7 PhysiCell7 purge_dups7 Racon7 antiSMASH6 Falco6 FeatureCounts6 GEMINI6 Gromacs6 Konstanz Information Miner (KNIME)6 KrakenTools6 Medaka6 MEGAHIT6 MetaPhlAn6 MuSiC Deconvolution6 RDKit6 RepeatMasker6 seqkit6 Seurat6 SPAdes6 TransDecoder6 vardict6 Vcflib6 Bakta5 Compleasm5 DropletUtils5 eggNOG-mapper v25 gffcompare5 GOseq5 humann5 InterProScan (EBI)5 iqtree5 MAPseq5 Recentrifuge5 Salmon5 Scipion5 SemiBin5 ToolDistillator5 UMI-tools5 Unipept5 ABRicate4 annotatemyids4 biomformat4 CellProfiler4 CheckM4 Clustal 2 (Clustal W, Clustal X)4 COMBAT-TB Workbench4 compute_sequence_length4 CoverM4 Cufflinks4 Diamond4 FastTree4 funannotate4 Galactic Circos4 HiCExplorer4 Infernal4 Meryl4 MetaBAT 24 MSstats4 Newick Utilities4 NGSUtils4 OMArk4 Picard4 PretextView4 PRINSEQ4 Prokka4 pyGenomeTracks4 Smudgeplots4 snippy4 Variant Effect Predictor (VEP)4 Workflow4Metabolomics4 xcms4 AmberTools3 bed to protein map3 Binette3 Cardinal3 ChiRA3 cisTEM3 Clair33 clusterProfiler3 customProDB3 Filtlong3 Helixer3 MAKER3 MaxBin3 MetaNovo3 metaspades3 MotionCor23 MSstatsTMT3 Nextflow3 picard_samtofastq3 SeqCode3 Snakemake3 SnpSift3 staramr3 tb-profiler3 VarScan3 VSEARCH3 YaHS3 AdapterRemoval2 AGAT2 ampvis2 AnnotSV2 AutoDock2 AutoDock Vina2 BBMap2 Bio3D2 BioContainers2 BRAKER12 BRAKER32 cBioPortal2 CheckM22 ChEMBL2 chemfp2 ChemicalToolbox2 cmsearch-deoverlap2 CNVkit2 CONCOCT2 cshl_fastx_reverse_complement2 dada22 dastool2 DeepVariant2 dRep2 edgeR2 EGA2 epiScanpy2 export2graphlan2 FastQ Screen2 FEELnc2 FLASH2 GATK2 GOEnrichment2 GraPhlAn2 GTDB-Tk2 Hostile2 htseqcount2 HUMAnN22 The Immune Epitope Database (IEDB)2 Integron Finder2 ISEScan2 kallisto2 limma2 Matchms2 MDAnalysis2 MEME2 metaQuantome2 MFAssignR2 miniasm2 MMseqs22 nanopolish2 NCBI Datasets2 NCBI Resources2 OBITools2 OMERO2 OmicFlow2 OptiType2 P2Rank2 pathview2 The Protein Data Bank (PDB)2 PEAR2 pilon2 PlasmidFinder2 PredPrIn2 Prodigal2 Proteinortho2 QIIME2 RepeatModeler2 sceasy2 Scipion-chem2 Seq2HLA2 Sequali2 SnapATAC2 SortMeRNA2 SuCOS2 tbl2gff32 tophat22 VADR2 vcfanno2 vcfutils2 XMIPP2 Adamant1 Alevin1 AMRFinderPlus1 iVar1 ANTsX1 Apollo1 ARGprofiler1 AUGUSTUS1 AutoSite1 BBTools1 Bioconductor1 BioPerl1 BlobToolKit1 blockbuster1 Bowtie1 CARNIVAL1 CAT and BAT1 CellChat1 celltypist1 ChIPpeakAnno1 Circos1 Clustal 1.8 (Clustal W, Clustal X)1 Combine Metaphlan and HUMAnN1 cuffdiff1 decoupleR1 Delly21 diaPASEF1 dupRadar1 eggNOG1 EGSEA1 EMBOSS1 EMU1 European Nucleotide Archive (ENA)1 ete1 ewastools1 fastplong1 FGENESH1 fgsea1 FlashLFQ1 Foldseek1 Fpocket1 FREEC1 GADES1 GAEVAL1 gblocks1 GBMatch - GBMPredictor1 GECKO1 geNomad1 GetOrganelle1 ggtree1 g:Profiler1 GROOT1 GSEA1 GTDB1 hAMRonization1 Heinz1 HiFiAdapterFilt1 Hifiasm1 HTSeq1 HTSlib1 ImageJ21 IsoformSwitchAnalyzeR1 iVar1 IWTomics1 JBrowse 21 KARGA1 KMA1 KofamKOALA1 kofamscan1 kraken-biom1 Krona1 LASTZ1 Liana+1 Liftoff1 LongReadSum1 lotus21 MAGeCK1 MALDIquant1 Mash1 metabuli1 MetaCoAG1 MethylDackel1 Micro-Meta App1 Mikado1 miniprot1 miRDeep21 MitoHiFi1 MITOS1 MOB-suite1 MolMeDB1 Metagenomic operational taxonomic units (mOTUs)1 MSMetaEnhancer1 multiGSEA1 MUMmer1 mzToSQLite1 NCBI fcs1 NextPolish1 nf-core-rnaseq1 ngsReports1 pangolin1 PathoFact21 pbmm21 Peakachu1 PfamScan1 phantompeakqualtools1 phyloseq1 PhysiBoSS1 PlasFlow1 PLINK1 Polypolish1 progeny1 protexcluder1 PubMed1 pyfastaq1 PyTorch1 qcxms1 QIIME 21 QuickTree1 RaceID1 RAMClustR1 RapidNJ1 RAxML1 RCAS1 recetox-msfinder1 RED1 RepeatModeler1 RIAssigner1 rnaQUAST1 RSEM1 SALSA1 scater1 SeqSero21 sinto1 SISTR1 SNAP1 Sniffles1 snipit1 SpatialData1 Squidpy1 srst21 strobealign1 Subread1 tabix1 Targetfinder.org1 TaxonKit1 TRANSIT1 trimAl1 Trinity1 Trinotate1 TSSr1 UCSC Genome Browser Utilities1 VAMB1 VAPOR1 varlociraptor1 varVAMP1 VelvetOptimiser1 WGCNA1 WoLF PSORT1 xtb1 More...

Galaxy760 Nextflow198 Common Workflow Language116 COMPSs73 Snakemake68 Python65 Jupyter42 Docker26 Scipion20 Shell Script18 Apache Airflow15 KNIME15 Autosubmit10 Playbook Workflow Builder Workflow9 R markdown9 Workflow Description Language8 Bpipe5 Argo Workflow2 BioCompute Object2 Quarto Markdown2 DVC1 Janis1 Perl1 Pi1 Plug-in1 R Markdown document1 Rbbt1 Uniform Interface to Computing Resources1 More...

Galaxy402 GTN385 Bioinformatics114 Genomics68 Transcriptomics59 Assembly54 PyCOMPSs52 Metagenomics51 Proteomics48 covid-1946 Ecology43 Supercomputer42 Workflows41 Nextflow34 Biodiversity33 data_persistence33 Python32 microbiome28 Annotation27 imaging27 non_data_persistence26 CWL25 genome-annotation23 Machine Learning23 Marenostrum IV22 rna22 single-cell21 COMPSs20 rna-seq20 Alignment18 dislib18 SNPs18 Statistics18 Marenostrum V17 variant-analysis17 workflow17 Tutorial16 variant_calling16 DT-GEO15 ERGA15 INDELs15 Name:neoantigen15 RNASEQ15 cancer14 Digital Twin14 Geophysics14 illumina14 name:single-cell14 nanopore14 ONT14 variant calling14 Amplicon13 epigenetics13 Example13 GATK413 image processing13 Metabolomics13 Cheminformatics12 Name:microgalaxy12 Virus12 bioimaging11 Climate11 Introduction11 jupyter11 name:training11 Virology11 Computational-chemistry10 FASTQ10 Name:clinicalmp10 Name:singlecell10 QC10 Snakemake10 FAIR workflows9 HiFi9 Large-genome-assembly9 Lg-wf9 Ml9 SARS-CoV-29 vgp9 WGS9 Earth-system8 Galaxy-interface8 Laptop8 mass-spectrometry8 Name:transcriptomics8 Ocean8 scRNAseq8 Segmentation8 softwareRequirements8 astronomy7 ChIP-seq7 COMPSs Use Cases7 DNA7 Java7 scalable7 Sequence-analysis7 TSI-annotation7 variant-calling7 antimicrobial resistance6 Autosubmit6 Classification6 EC-Earth6 evolution6 Genome assembly6 genome_assembly6 groovy6 Hi-C6 IMPaCT-ISCIII6 Knime6 Mgnify_amplicon6 molecular dynamics6 name:Collection6 NGS6 OMERO6 pacbio6 PBS6 RDM6 Retrosynthesis6 shotgun6 spatial6 Task aggregation6 Wrappers6 bacterial-genomics5 bbmap5 binning5 bpipe5 BUSCO5 BY-COVID5 copernicus5 covid19.galaxyproject.org5 Databases5 genome5 identification5 image-processing5 mapping5 Name:iwc5 Name:pathogfair5 NCI5 pangeo5 pediatric5 phylogenetics5 rare diseases5 remote_dataset5 SAMTools5 scipion5 scRNA-seq5 taxonomic-classification5 Visualisation5 16S4 ABRomics4 AMR4 antimicrobial-resistance-genes4 ARTIC4 ATAC-seq4 BGE4 Bioimage4 CellProfiler4 Deep learning4 display4 EOSC4Cancer4 Epigenomics4 FAIR4 Flexynesis4 Gadi4 generic4 Germline4 gpu4 helicase4 HPC4 image-analysis4 long-read-sequencing4 Machine_learning4 Metabarcoding4 metatranscriptomics4 mpxv4 Multi-omics4 name:ASSEMBLY+QC4 Name:deconv-eval4 name:ONT4 Name:scrna-seq4 openms4 pathogen4 phylogeny4 quantification4 R4 rna virus4 ro-crate4 scATAC-seq4 spa4 spatial transcriptomics4 structural variants4 taxonomic-profiling4 vadr4 vardict4 vvv2_display4 10X3 10x-genomics3 10xgenomics3 AMR-detection3 Assembly+QC3 biosynthetic-gene-clusters3 brs3 BWA3 BWA-mem3 Conversion3 cryoem3 DataQC3 DE_NOVO3 Default-SDR3 denovo-assembly3 dna barcoding3 dna-methylation3 eDNA3 FastQC3 GC-MS3 Gene Prioritization3 genome-assembly3 hCNV3 HiC3 hifiasm3 hla3 imageanaylsis3 kallisto3 kraken3 long-reads3 manta3 Merqury3 MetaDEGalaxy3 metagenome3 microbial3 Microgalaxy3 MultiQC3 Name:by-covid3 name:ERGA3 name:ILLUMINA3 Name:seurat3 Name:trajectory_analysis3 NCI-Gadi3 NFDI4BIOIMAGE3 OME-Zarr3 paired-end3 Pathway Analysis3 pathway prediction3 Profiling3 protein3 protein-sequences3 proteogenomics3 quality3 S33 SANBI3 single-cell-rna-seq3 Somatic3 STAR3 Synthetic Biology3 synthetic-biology3 textcleaning3 training3 transcriptome3 whole genome sequencing3 yolo3 18S2 4culture2 adna2 Alternative splicing2 alternative-splicing2 annotsv2 antibiotic-resistance2 BAM2 bash2 benchmark dataset2 bgc2 bioformats2 BioID2 blast2 Braker32 BROAD2 C++2 cage2 cage-seq2 cageseq-data2 Cellranger2 cfDNA2 ChIP2 clip-seq2 CNVkit2 CODEX22 collections2 Consensus2 Contributing2 Copy Number Variation2 coronavirus2 cosifer2 cosmic2 CTE-Power92 culturedata2 Deep_learning2 demultiplexing2 dengue2 denovo2 differential_expression2 differential-expression2 Digitalhumanities2 DNA-seq2 Docker2 Drug design2 earth observation2 Ecoregionalization2 Electron microscopy2 ena2 epitope-prediction2 ExomeDepth2 experimental structures2 exploration2 Exposomics2 expression2 fasta2 Flashlite2 gene set enrichment analysis2 Genomeannotation2 genomics-visualization2 Glacios2 Gleam2 gnomad2 GROMACS2 GUCFG2galaxy2 GWAS2 human2 HySEA2 Iedb2 image-segmentation2 ITS2 Jbrowse2 k-mer2 linkage_map2 lipid interactions2 long-read2 Marineomics2 MARS-seq2 Matrix Multiplication2 membrane proteins2 MERS2 Meryl2 metabolic engineering2 microscopy2 MIRACUM2 mirna prediction2 Mpox2 multi-specimen-input2 name:public-data2 nanopore-sequencing2 natural history collections2 NCI Gadi2 networks2 NSP132 OME-TIFF2 openrefine2 oxford-nanopore2 pangenome2 pathway design2 peak-calling2 personalized medicine2 phasing2 phylogenomics2 Pipeline2 Plant2 plasmids2 pool_amplicon2 prediction2 protein structure2 protein-databases2 protein-families2 Protein-Protein interaction prediction2 protein-structure2 proteins2 pypgatk2 PyTorch2 QCxMS2 quality control2 Quast2 RDF2 referencegenome2 Report2 Reproducibility of Results2 Reviewed2 scientific publication text mining2 Semantic Network Analysis2 sequence annotation2 sequence search2 Single cell clustering2 singularity2 smart-seq 22 snv2 star-solo2 stitching2 structural biology2 structural-variants2 Supernova2 SVD2 synteny2 synthetic data2 tabulardata2 TalosArctica2 taxonomy-assignment2 TitanKrios2 Tophat22 TransBioNet2 transcription2 trinity2 TSI2 Tsunami2 tuberculosis2 validated-2022-06-292 variation2 VARSCAN22 VCF2 Virtual Drug Screening2 visualization2 Voronoi2 WDL2 wes2 west nile2 zika2 10.3390/microorganisms100202921 3dunet1 ABR1 abricate1 adaptor1 AI1 AI governance1 AI transparency1 air-quality1 airr1 alevin1 AlphaFold1 alphafold21 Alya1 amp1 amplicon-sequencing1 ampliconarchitect1 ampliconsuite1 ancient dna1 ancient-dna1 ancient-dna-analysis1 ancientdna1 annotation pipeline1 antimicrobial-peptides1 ARC1 arg1 Argo1 Artificial Intelligence1 Asaim1 atac1 ATACseq1 atera1 Audio1 Augustus1 AutoDock1 automated workflows1 b-cell1 BackTrackBB1 bacteria1 bacterial1 bacterial-genome-analysis1 bacterial-genomes1 bamtofastq1 bases2fastq1 BBduk1 bcl2fastq1 Beacon1 Behavioral data1 benchamrking1 benchmark1 benchmarking1 Big-data1 BioBB1 bioformats2raw1 Bioinformatics tool1 bioinformatics workflow1 biomarker-discovery1 Biomedical Ontologies1 BioScanEurope1 BioStudies1 biosurveillance1 bisulfite-sequencing1 Bootstrapping1 bowtie21 BQSR1 braken1 brokering1 bustools1 bwa-mem21 carveme1 CATH1 causal inference1 cBioPortal1 cell-lines1 chimeric-alignment1 Chinese-language1 Chowell_train_test1 chromatin-accessibiity1 chromatin-immunoprecipitation1 chromosome-conformation-capture1 circle-seq1 circular1 citizen science1 Climate model1 clinical1 clip1 Clustering1 cmip61 common data model1 Community_metrics1 community-detection1 comparative effectiveness1 comparative-genomics1 Comparison1 Compomics1 Connectome-based predictive modeling1 consensus peaks1 conservation genomics1 container1 contamination1 contigs1 coprolite1 corruption1 counts1 covid191 CPM1 cramtofastq1 crispr1 crispr-analysis1 crispr-cas1 cross-validation1 cryosparc1 ctat1 ctdna1 Cut&run1 cutandrun1 cutandrun-seq1 cutandtag1 cutandtag-seq1 CUTnRUN1 CWR1 cytometry1 Darwin core1 DaSch1 data annotation1 data fusion1 data integration1 Data package1 data reproducibility1 data retrieval and transformation1 data transformation1 data wrangling1 data-cleaning1 data-independent-proteomics1 data-recovery1 database1 database-builder1 DataOne1 dda1 ddbj1 DE1 de novo1 de-identification1 decoding1 decontamination1 deep-learning1 deep-variant1 Deeplearning1 demo1 deseq21 Dh1 dia1 dia-proteomics1 diagnostics1 DIAMOND1 Diff1 differential expression1 differential-abundance1 directed acyclic graph1 disease outcome prediction1 DL1 Domain-Domain interaction1 dot-plot1 download1 dRNAseq1 drug discovery1 drug-response1 drug-response-prediction1 drugs1 dualrna-seq1 durg response simulation1 Earth Sciences1 earth-observation1 Earthquake Detection1 eccdna1 ecdna1 Ecological metadata language1 eFlows4HPC1 EGA-archive1 Electrophoresis_gel1 elementbiosciences1 em-seq1 emergen_validated1 EML1 eml-annotation1 Environmental monitoring1 eosc-nordic1 epidemiology1 epigenome1 epitope1 epitope-prioritisation1 Ethics1 eukaryotes1 eukaryotic genome1 Evaluation1 evolutionary-tree1 EVORA1 exome1 Explainable AI1 Expospomics1 extrachromosomal-circular-dna1 EZyRB1 facs-sorting1 FAIR data1 fair-principles1 fastp1 fastq-corrupted1 fastq-format1 fcs1 featurecounts1 fiber-seq1 file conversion1 filter1 filtering1 fish1 fMRI1 Fnn1 Formulaassignment1 Fragmentomics1 function1 Functional Analysis1 Fungi1 fusion1 fusion-genes1 Galaxy-E1 GATK1 GATK31 GEM1 genbank1 gene expression analysis1 gene expression correlation1 gene expression data wrangling1 Gene ontology term sets similarity1 gene prediction1 gene-expression1 gene-fusion1 GeneMark-ET1 generalization1 genetic design1 genome erosion1 genomic ancestry1 genotype1 geo1 geo database mining1 geology1 Geophyics1 Geosciences1 gff31 ggbio1 GLM1 global assemblies1 glycomics1 gnps1 google1 graph1 Gravitational Waves1 GRIDS1 GRIDSS1 GRN1 gro-seq1 gsea1 GTF1 GUI1 Habitat fragmentation1 Ham100001 HaplotyeCaller1 Helixer1 hicar1 high-throughput1 high-throughput_sequencing_analysis1 historical dna1 hla-typing1 hmdb1 horizontal-gene-transfer1 host-pathogen1 host-pathogen PPIs1 HTSeq1 HuggingFace1 Human genomics1 Human-AI collaboration1 Human-in-the-loop1 Humanities1 humann21 Hybrid Workflow1 hybrid-assembly1 hyperparameter-tuning1 IA1 IDR1 image file format1 Image_classification1 Image_learner1 imageJ1 Imagerecognition1 immcantation1 immunology1 immunopeptidomics1 immunorepertoire1 imputation1 index1 intelligences artificiel1 international comparison1 Introductions1 iontorrent1 isoform switching1 isoseq1 isoseq-31 Iwtomics1 Juicer1 kmeans1 kmer1 kmer-counting1 kmer-frequency-count1 kraken21 Kratos Multiphysics1 krona1 Labbook1 label-free-quantification1 Land cover classification1 landsat1 Landscape ecology1 last1 lava1 lfq1 LiftOver1 light-sheet-microcopy1 limma1 linked-reads1 Llr6_model1 Logistic_regression_model1 longitudinal1 Loris1 Lotus21 low-pass-sequencing1 Low-temperature plasma physics1 Ludwig1 Luigi & Rufus workflow1 machine-learning1 macs21 MAG1 Magic1 map1 map_to_reference1 Marine omics1 Marinebiodiversity1 mass-spec1 massbank1 MaxQuant1 memote1 metagenomes1 metagenomic-profiling1 Metaplasmidome1 metataxonomics1 methyl-seq1 MGE1 mhc1 mhc-binding-prediction1 microarray1 minimal-example1 miniTurboID1 Mito-flash1 Mitochondrion_tracking1 mlxv1 mnase-seq1 Mnist1 Mobilome1 model1 Modeling1 modern dna1 ModGP1 molecular-pixelation1 molecularcartography1 Moleculardynamics1 mpvx1 MRI1 ms11 ms21 Multimodal1 multiplexed-imaging1 Multivariate1 Mutect21 n501 name:amplicon1 Name:bacsnp1 Name:baculoviridae1 Name:baculovirus1 Name:band_intensity1 Name:bioimaging1 Name:brightfieldmicroscopy1 Name:circos1 Name:colordeconvolution1 Name:data-management1 Name:deconvolution1 Name:fairymags1 Name:gtn1 Name:histology1 Name:histologystaining1 Name:immunohistochemistry1 Name:massontrichrome1 Name:naldv1 Name:nanopore1 name:PROFILING1 Name:qupath1 Name:scanpy1 Name:sequenceanalysis1 Name:single_cell1 Name:viz1 nanostring1 nanostringnorm1 nascent1 natural-products1 ncbi sra1 ndvi1 nf-core1 NGFF1 Noiseestimation1 non-coding1 non-model1 Non-parametric1 nonspliced1 Nord31 NS31 nucleosome1 nucleosome-maps1 nucleosome-positioning1 observation1 ocr1 oncology1 openebench1 optitype1 ortholog1 pairwise-alignment1 panel1 parallel1 Parsl1 pathogen-genomics1 pathogen-identification1 pathogenicity score1 Pathology1 Pathway co-occurrence1 pbat1 peptides1 Perl1 Permeability1 personalized-medicine1 Pfam1 phylogenetic-placement1 pixelator1 pixelgen-technologies1 plasma1 plasma medicine1 Plasma-MDS1 plasmid1 pod51 Polarized images1 polygenic risk score1 polygenic score1 population genomics1 population-genetics1 pox1 pre-processing1 Presence_absence1 pro-seq1 prognosis1 prokaryotes1 prokka1 Proline1 Protein domains1 protein evidence1 protein interactin data triplification1 protein interactions database integration1 Protein mining1 protein nanopore1 Protein structure analysis1 protein-fold-prediction1 protein-folding1 Protein-Protein Interaction1 proteins network augmentation1 Provenance1 Pseudobulk1 public cancer datasets exploration1 Public colorectal cancer dataset1 publication1 Pubmed1 Pubtator1 puretarget1 purge_dups1 qiime21 qPCR1 QTL mapping1 quality-control1 quantseq1 R-package1 radio interferometry1 randomization-tests1 rare-disease1 rastair1 rdkit1 readmapping1 reads_selection1 reads_simulation1 reads-interleaving1 Recalibration1 Reconstruction1 recovery-tool1 Reduced Order Modeling1 registration1 Regression1 Regulatory Mendelian Mutation score1 RELIANCE1 ReMM1 repeat1 repseq1 rice1 rna-rbp-interactions1 robustness-assessment1 Roi1 rrbs1 rrna1 RSeQC1 salmon1 sambamba1 satellite-imagery1 screening1 SDM1 secondary-metabolites1 Seismic Detection1 Semantic Comparison1 Semantic Interpretation1 semantic web standards1 Sempi31 Sentinel-21 sentinel-2 data1 sequence-classification1 shiny1 short-reads1 SIM1 single particle analysis1 single-cell-omics1 single-end1 single-molecule sensing1 SKA1 Skin_lesion1 slamseq1 small-rna1 small-variants1 Smfish1 smoove1 smrna-seq1 Solid Earth1 SPARK1 spatial-data-analysis1 spatial-transcriptomics1 Species abundance1 spectra1 spectral-unmixing1 spike-in normalization1 splicing1 sra1 standardisation1 strandedness1 StringTie1 submission1 survivor1 SV1 synapse1 Tabpfn1 TAD1 tama1 taps1 target-panels1 targeted1 taxonomies1 taxonomy1 tcga1 TELLSeq1 telomere1 Text1 Text_mining1 Text-mining1 tiddit1 tidyverse1 tma1 tmt1 Tomography1 topologically associating domains1 Toxicology1 toxins1 trajectories1 Trans-Proteomic1 Transcription Start Sites1 transcriptional-dynamics1 tree1 trend-analysis1 trends1 trimming1 tss1 tumour1 ultra1 umi1 umis1 Unicycler1 unique-molecular-identifier1 unpaired-reads1 urgent computing1 vaccines1 validaiton o protein interaction predictions1 variant1 variant pathogenicity prediction1 variant-annotation1 Vegetation1 Vegetation index1 VGP_curated1 Video1 viral1 viral-integration1 viral-metagenomics1 virulence-factors1 virus-genomes1 viruses1 virusintegrationfinder1 well-formed1 Whisper1 whole-exome-sequencing1 whole-genome-alignment1 whole-genome-sequencing1 wigits1 wnt signaling1 worflow1 Workflow RO-Crate1 WorkflowHub1 wts1 xenium1 XNAT1 More...

GTN Bot382 WorkflowHub Bot209 Genís Bayarri99 Raül Sirvent37 Anna Syme25 Diego De Panis18 Bert Droesbeke17 Laura Rodriguez-Navas14 Sarah Williams14 Johannes Kemper14 Daniel Marchan13 Daniel Clarke13 Yvan Le Bras12 Bart Nijsse12 ramiz khaled11 Ambarish Kumar10 Anne Fouilloux9 Georgina Samaha9 Tracy Chew9 Jean-Marie Burel9 Cristóbal Gallardo9 Patrick Austin9 Miguel Vazquez8 Cristian Tatu8 Fernando Vázquez-Novoa8 Paul De Geest8 Douglas Lowe7 Yasmmin Martins7 W. Daniel Kissling7 Johan Gustafsson6 Fabrice Touzain6 Pablo Goitia6 Yolanda Benítez Quesada6 Nicolas Blavet6 Martin Beracochea5 Jasper Koehorst5 Sergi Sayols5 Helena Rasche5 Oliver Woolland5 Pablo Orviz5 Tom Brown5 Matthieu Muffato5 Aldar Cabrelles5 Riccardo Massei5 haoke deng5 Melchior du Lac4 Willem de Koning4 Peter van Heusden4 johan Rollin4 Dennis Dollée4 Konstantinos Kyritsis4 Kateřina Storchmannová4 Bryan Raubenolt4 Nicolò Giacomini4 Pavlo Lutsik4 Thomas N4 Stian Soiland-Reyes3 Irene Sánchez3 Juma Bayjan3 Valentine Murigneux3 Mike Thang3 Wolfgang Maier3 Casper de Visser3 Anton Nekrutenko3 Jeanette Reinshagen3 Varsha Kale3 Pablo Riesgo Ferreiro3 Damon-Lee Pointon3 Oliver White3 Timon Schlegel3 Sora Yonezawa3 Marie Jossé3 Daniel Del Hoyo3 Chris Wyatt3 Tristan Reynolds3 Hervé Ménager2 Luca Pireddu2 Robin Long2 Beatriz Serrano-Solano2 Pavankumar Videm2 Simone Leo2 Ross Thorne2 Sarah Beecroft2 Cyril Noel2 Volodymyr Savchenko2 Johannes Köster2 thodk2 Elida Schneltzer2 Pasi Korhonen2 Miguel Roncoroni2 Kary Ocaña2 Alejandra Escobar2 Cristiane Taniguti2 Peter Menzel2 Adam Tofilski2 Simon Rolph2 David James Sherman2 Stevie Pederson2 Tina Tian2 Daan Hazelaar2 Andrea Furlani2 Vasiliki Panagi2 Khaled Jum'ah2 Jessica Gomez-Garrido2 Jorge Ejarque2 Louise Cordrie2 Alberto Garcia2 Yi Sun2 Rutger Vos2 Magdalena Antczak2 Nathaniel Matteson2 Dominik Lux2 Ashish Bhawel2 Xiaolong Luo2 Kristina Gomoryova2 dan rick2 Diana Chiang Jurado2 Michael Lynch2 Pauline Seguineau2 Panna Lukacs2 Oleg Kalashev2 Manuel Giménez de Castro Marciani2 SaibotMagd magd2 Hugo Lefeuvre2 Jiamian He2 Dan Parsons2 Andrei Variu2 Yichun Feng2 Alem Gusinac2 Huihai Wu2 Cenny Taslim2 Martijn Melissen2 Molène Mahé2 Caroline Ott2 Folorunsho Bright2 francois moreews1 Camille Juigné1 Laura del Cano1 Ivan Topolsky1 ignacio eguinoa1 Andrea Giachetti1 Michael R. Crusoe1 Matteo Chiara1 Carlos Oscar Sorzano Sanchez1 Paul Brack1 phytopat gembloux1 johan Rollin1 Marco De La Pierre1 Julian Uszkoreit1 Qinqin Long1 Dennis Hendriksen1 Daphne Wijnbergen1 Patrick Durand1 Richard Lupat1 Javier Moldon1 Bianca Pasat1 Rob Edwards1 Valentin Tilloy1 Michael Roach1 Leah Kemp1 Ryan Patterson-Cross1 Alexander Botzki1 [email protected] Panou1 Haris Zafeiropoulos1 Kaur Alasoo1 Hrishikesh Dhondge1 Marvin Martens1 Marlene Rezk1 Tong LI1 Naga Kasinadhuni1 Radek Veverka1 Tim Booth1 Samuel Lambert1 Ekaterina Sakharova1 Saskia Hiltemann1 Bugra Oezdemir1 Max Schubach1 Luc Cornet1 Silas Kieser1 Felicita Gernhardt1 Nico Trummer1 Ang Guo1 Diego Garrido-Martín1 Roderic Guigó1 Bruno P. Kinoshita1 Luca Cozzuto1 Xiaokang Zhang1 Zavolan Lab1 Mahnoor Zulfiqar1 Jeffrey Detras1 Thomas Gruber1 Marjan Meurisse1 Sanjay Nagi1 Ben Price1 Jorrit Mesman1 Elisabetta Spinazzola1 Rosa M Badia1 Anand Maurya1 Agata Kilar1 Vincent Hervé1 Markus Konkol1 Akshay Akshay1 Phuong Doan1 Davide Gurnari1 David Yuan1 Justin Sonneck1 Daniele Lezzi1 Bram Danneels1 Zafran Hussain Shah1 Denys Savchenko1 Michael Hall1 Rafael Terra1 Rebecca Bruni1 Ziad Al-Bkhetan1 Aishwarya Iyer1 Archit Dabral1 Andrii Neronov1 Michael Lloyd1 Arnau Soler Costa1 Thomas Roetzer-Pejrimovsky1 Helge Hecht1 Wudmir Rojas1 David Potesil1 Carlos Classen1 Verena Kutschera1 Usman Rashid1 Eli Chadwick1 Zsolt Balázs1 Jinhu Wang1 Pavel Akhtyamov1 Francis Charette-Migneault1 Francesco Messina1 Sebastian Röner1 Ann-Kathrin Dörr1 仕卓 张1 Mahesh Binzer-Panchal1 Jen-Hung Wang1 Fabian Hausmann1 Qiang Ye1 Liang Cheng1 Benjamin Istace1 Alberto Aguado1 YIN ZHANG1 Kisaru Liyanage1 Kieran Atkins1 Tobias Bachmann1 Tristan Pelser1 Albert Puiggros1 Daniel Bauer1 Jens Krumsieck1 Zhi Song1 Viola Fanfani1 Lorenz Gruber1 Armin Dadras1 zhantian xu1 Natasha Clarke1 Jonas Kasmanas1 Zhen Zhang1 Tyler Lovelace1 Jeanne Chèneby1 Robin Navest1 Avani Bhojwani1 Yichao Hua1 Azusa Kubota1 Bundit Boonyarit1 Jorge Mas Gomez1 Ma Wenlong1 Crist John Pastor1 Ignacio Garach Vélez1 Thanh-Hai Le1 Qibo Xu1 Thomas Barba1 Gemy Kaithakottil1 Diane Duroux1 Myrthe van Baardwijk1 Hana Plešingerová1 Marek Cmero1 Joy Chen1 Nikolay Oskolkov1 Arkadiusz Sitek1 Zhixing Feng1 Takudzwa Musarurwa1 Abao Xing1 Caner Bağcı1 Won-Min Song1 qiankunzizairen Liu1 Daniela Schneider1 Henry Schober1 Evangelos Karatzas1 Isabella Brown1 Pierre Poulain1 Frederick Jaya1 Evan P. Troendle1 Łukasz Opioła1 Bryce Fukuda1 Stefan Dvoretskii1 Mohsen Ahmadi1 Fangfang Li1 João Cavalcante1 malmcajs Malm1 marcin joachimiak1 Lidong Guo1 Philippe Ruiz1 Jiahui Luo1 Sumeet Tiwari1 Alise Ponsero1 Jakob Peder Pettersen1 Júlia Ortís Sunyer1 Pedro Carvalho1 Kelly Sovacool1 Johannes von Kleist1 Christopher Tibbs1 Xiaomin Zhang1 Harpreet Kaur1 Cigdem Sevim Bayrak1 Débora Pina1 Artur Radomyski1 James Coleman1 Luca Mannino1 Qin LuLu1 Chris Ashwood1 Devon Siemes1 Yuqian Liu1 AJAY BHATIA1 Amirhossein Naghsh Nilchi1 Jennifer Mattock1 Hentze group1 Fabián Robledo1 Rodrigo Rocha1 Manel Colominas1 Ji Wang1 More...

Galaxy Training Network398 Intergalactic Workflow Commission (IWC)110 BioBB Building Blocks109 nf-core100 EuroScienceGateway48 Australian BioCommons44 Workflows and Distributed Computing44 Galaxy Australia33 ERGA Assembly24 usegalaxy-eu23 GalaxyProject SARS-CoV-221 QCIF Bioinformatics21 Sydney Informatics Hub19 Scipion CNB18 COMPSs Tutorials18 UNLOCK17 WP7 - Earthquakes14 NIH CFDE Playbook Workflow Partnership13 MGnify12 PNDB12 eFlows4HPC general11 BSC-CES10 Galaxy Climate9 OME9 EOSC4Cancer9 PerMedCoE8 IBISBA Workflows7 yPublish - Bioinfo tools7 Biodiversity Genomics Europe (general)7 Laserfarm applications to European demonstration sites7 CWL workflow SARS-CoV-26 Integrated and Urban Plant Pathology Laboratory6 ANSES-Ploufragan6 Tree of Life Genome Analysis6 EGA6 Bioinformatics Unit IIS-FJD6 Bioinformatics Core CEITEC6 IMBforge5 UX trial team5 iPC: individualizedPaediatricCure5 EJPRD WP13 case-studies workflows5 Specimen Data Refinery5 Cluster Emergent del Cervell Humà5 Seq4AMR5 HoloFood at MGnify5 Euro-BioImaging5 WP5 - Volcanoes5 UFZ - Image Data Management and Processing Workflows5 DNA Foundry5 mzlab5 NanoGalaxy4 SANBI Pathogen Bioinformatics4 Biodata Analysis Group4 WP8 - Anthropogenic geophysical extremes4 Tree of Life Genome Assembly4 Chemical Data Lab4 Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4 Proteomics CEITEC4 BioImage Informatics and Analysis Workflows4 galaxy-SynBioCAD4 Computational Metabolomics (UoB)4 SARS-CoV-2 Data Hubs3 SeBiMER3 Snakemake-Workflows3 ODA3 CO2MICS Lab3 Medizinisches Proteom-Center, Medical Bioinformatics3 EU-Openscreen3 X-omics3 TRON gGmbH3 TRE-FX3 ERGA Annotation3 Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)3 BY-COVID (general)3 NHM Clark group3 FAIR-EASE3 bonohulab3 iBOL Europe Museum Skimming3 Melbourne Bioinformatics3 nf-core viralrecon2 V-Pipe2 EOSC-Life - Demonstrator 7: Rare Diseases2 Pawsey Supercomputing Research Centre2 Quadram Institute Bioscience - Bioinformatics2 Applied Computational Biology at IEG/HMGU2 INFRAFRONTIER workflows2 TransBioNet2 CRC Cohort2 Workflows Australia2 usegalaxy.be workflows2 Air Quality Prediction2 NBIS2 Read2Map2 ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2 KircherLab2 Apis-wings2 BioDT Use Case 4.1.1.2 Ecosystem services2 MISTIC2 Black Ochre Data Labs2 Workflows for geographic science2 Katdetectr2 Pillar III: Urgent computing for natural hazards2 EMBL-Bioimage Analysis Support2 CholGen2 Peter Menzel's Team2 Genome Data Compression Team2 RECETOX SpecDatRI2 WGGC2 ELIXIR Metabolomics2 Culhane Lab2 ErasmusMC Clinical Bioinformatics2 Astroparticle Lab2 CDPP2 FAIR_thesis: Marine acoustic data2 Biomedical_LLM2 Cell Free2 CMG-GUTS2 EI Papatheodorou Group2 Kendall-Theisen lab pipelines2 BiRD2 Systems and Synthetic Biology2 BioFAIR2 CSB2 Eco-Flow2 Membrane Protein-Lipid Interaction Database Pipeline2 NMR Workflow1 COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1 Italy-Covid-data-Portal1 EOSC-Life-WP6-Demos1 EOSC-Life WP31 MOLGENIS1 Janis1 IAA-CSIC1 FAME1 CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1 HecatombDevelopment1 OpenEBench1 Bioinformatics and Biostatistics (BIO2 ) Core1 VIB Bioinformatics Core1 Single Cell Unit1 emo-bon1 CINECA1 Toxicology community1 Gyn Department1 AGRF BIO1 ELIXIR Belgium1 CAPSID1 Edinburgh Genomics1 BCCM_ULC1 Computational Science at HZDR1 Big data in biomedicine1 Guigó lab1 Statistical genetics1 Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1 Bioinformatics Unit @ CRG1 ELIXIR Proteomics1 IRRI Bioinformatics Group1 Zavolan Lab1 Metabolomics-Reproducibility1 NGFF Tools1 Bioinformatics workflows for life science1 Helmholtz Scientific Project Workflow Platform1 BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection1 Lake Erken modelling setup1 EOSC-Life WP3 OC Team, cross RI project1 ARA-dev1 Mendel Centre for Plant Genomics and Proteomics1 WP6 - Tsunamis1 Metagenomic tools1 Pillar I: Manufacturing1 Polygenic Score Catalog1 MLme: Machine Learning Made Easy1 Dioscuri TDA1 MMV-Lab1 EBP-Nor1 Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1 Pangenome database project1 HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1 Building spatio-temporal workflows in Galaxy1 CEMCOF1 Jackson Laboratory NGS-Ops1 BRAIN - Biomedical Research on Adult Intracranial Neoplasms1 Institute for Human Genetics and Genomic Medicine Aachen1 Plant-Food-Research-Open1 KrauthammerLab1 CRIM - Computer Research Institute of Montréal1 Medvedeva Lab1 16S rRNA Analysis1 Protein-protein and protein-nucleic acid binding site prediction research1 IDUN - Drug Delivery and Sensing1 MAXOMOD1 NkuyfqLab1 EnrichDO1 Application Security - Test Crypt4GH solutions1 RenLabBioinformatics1 National Computational Infrastructure (NCI) WorkflowHub team1 Into the deep1 CPM1 Research Data Management ICE-21 LiDAR1 Senckenberg Digital Collection and Biodiversity Information Technologies1 FAIRagro M4.41 QuackenbushLab1 Virus sequencing team1 SOS1 CSUbioinformatics1 SIMEXP1 Kasmanas1 Structural Variation Analysis1 CausalCoxMGM Team1 CrustyBase1 Applied Computational Cancer Research1 Click-qPCR1 BAID Team1 Vector informatics and genomics group1 AlmondBreedingLab1 Artificial Design for Intelligent Breeding1 MTB Bioinformatics Workflows1 RTC Bioinformatics1 Machine Learning Techniques in Microbiome1 ColoPola: A polarimetric imaging dataset for colorectal cancer detection1 AI in Zhou Lab1 Gevaert Lab1 AMRMALDI1 EI Core Bioinformatics Group1 SolutionMake1 GENEX1 iPol1 zxfenglab1 BioX Fanatics1 Li-Omics Lab1 ZiemertLab1 Song Lab1 PanGIA1 Plant Computational Genomics1 Deveson Lab1 Transcriptomics in unexplained recurrent pregnancy loss1 datafun1 Biodepot Spatial Proteomics Team1 WEHI SODA Hub1 Anesthesia and Neurocritical Care Medicine1 BioimageAIpub1 Dalmolin Systems Biology Group1 FAIRMD1 KG-Microbe1 BGIQD1 GenotoulBioinfo1 Liver Polyploidy Research Team1 UiT-CANS1 PathoFact21 Polyploid Spatial Transcriptomics Team1 CCBR1 FONDA T9 Project Team1 Exeter Genetics1 HP-Phasing1 CPSM1 Bayrak Lab1 EnChemTox1 Tesla1 FHAIVE - Finnish Hub for Development and Validation of Integrated Approaches1 ZhuLab MII Group1 Protea Glycosciences Analytical1 Immunodynamics-Engel-Lab1 NanoporeDB1 SyBR Development1 EMBL Hentze Group1 ConesaLab1 INP-SDT1 UnB-CompGen1 Mitra Lab1 More...

Galaxy531 Independent Teams426 BioExcel109 nf-core100 Australian BioCommons81 eFlows4HPC66 ELIXIR53 COVID-19 Biohackathon31 ERGA27 A Digital Twin for GEOphysical extremes (DT-GEO)24 Paris Biofoundry11 EOSC4Cancer9 Sanger Tree of Life8 Biodiversity Genomics Europe (BGE)7 EcoLiDAR - ecological applications of LiDAR point clouds7 Bioinformatics Core CEITEC6 DISSCo - Distributed System of Scientific Collections5 HoloFood5 Proteomics CEITEC4 EOSC-Life3 BioDT3 Hiroshima workflow community3 iBOL Europe3 Melbourne Bioinformatics3 ELIXIR Belgium2 GenomeDataCompression2 EIRENE-CZ2 WGGC2 EOSC-Life-WP61 BeYond-COVID (BY-COVID)1 JKU 1 IRRI-Bioinformatics1 HELIPORT1 Coupled Catchment Lake Modelling1 AquaINFRA1 IKIM 16S Analysis1 MAXOMOD1 NkuyfqLab_Space1 Microbiome Machine Learning UGR1 Plant Computational Genomics Lab1 Garvan Institute of Medical Research1 More...

Adam Hospital105 Genís Bayarri104 Anna Syme24 Diego De Panis18 Bart Nijsse17 Jasper Koehorst15 Yvan Le Bras14 Tracy Chew13 Georgina Samaha12 Paul Zierep11 Wolfgang Maier10 Raül Sirvent10 Marie Jossé10 Romane Libouban10 Patrick Austin10 Laura Rodriguez-Navas9 Jean-Marie Burel9 Anthony Bretaudeau9 Delphine Lariviere9 Javier Conejero9 Tom Underwood9 Alexander Belozerov9 Martin Beracochea8 Rosemarie Sadsad8 Cali Willet8 Cristian Tatu8 José Mª Fernández7 Saskia Hiltemann7 Jorge Ejarque7 Jinhu Wang7 W. Daniel Kissling7 Douglas Lowe6 Rosa M Badia6 Riccardo Massei6 Pablo Goitia6 Coline Royaux5 Sergi Sayols5 Oliver Woolland5 Aldar Cabrelles5 Melchior du Lac4 Friederike Ehrhart4 Gareth Price4 Laura Leroi4 Nicolas Schmid4 Bryan Raubenolt4 Bérénice Batut4 Ambarish Kumar3 Pavankumar Videm3 Helena Rasche3 Juma Bayjan3 Ozan Ozisik3 Valentine Murigneux3 Alexandre Cormier3 Patrick Durand3 Cyril Noel3 Mike Thang3 Volodymyr Savchenko3 Laurence Livermore3 Germán Royval3 Cristóbal Gallardo3 Cenna Doornbos3 Casper de Visser3 Jeanette Reinshagen3 Ekaterina Sakharova3 Tom Brown3 Konstantinos Kyritsis3 Damon-Lee Pointon3 Fernando Vázquez-Novoa3 Clea Siguret3 Sora Yonezawa3 Hugo Lefeuvre3 Tristan Reynolds3 Stian Soiland-Reyes2 Ivan Topolsky2 Luca Pireddu2 Anne Fouilloux2 Peter van Heusden2 Michael R. Crusoe2 Julian Uszkoreit2 Pierre Cuzin2 Philipp Gormanns2 Kary Ocaña2 Pierre Marin2 Varsha Kale2 Tatiana Gurbich2 Cristiane Taniguti2 Peter Menzel2 Diego Garrido-Martín2 Roderic Guigó2 Stevie Pederson2 Andrea Furlani2 Ben Price2 Johannes Kemper2 Jessica Gomez-Garrido2 Phuong Doan2 Denys Savchenko2 Kateřina Storchmannová2 Changlin Ke2 Ziad Al-Bkhetan2 Dominik Lux2 Helge Hecht2 Kristina Gomoryova2 Zargham Ahmad2 Eli Chadwick2 Nicolò Giacomini2 Saim Momin2 Pauline Seguineau2 Kisaru Liyanage2 Matthew Downton2 Mitchell J O'Brien2 Manuel Giménez de Castro Marciani2 Dan Parsons2 Andrei Variu2 Huihai Wu2 Cenny Taslim2 Audrey Bihouee2 Martijn Melissen2 Bert Droesbeke1 Camille Juigné1 Krzysztof Poterlowicz1 Willem de Koning1 Pau Andrio1 Johan Gustafsson1 Matthias Haimel1 Carlos Oscar Sorzano Sanchez1 Paul Brack1 Sarah Beecroft1 Marco De La Pierre1 daniel rickert1 Richard Lupat1 Johannes Köster1 Valentin Tilloy1 Michael Roach1 Elida Schneltzer1 Luiz Gadelha1 Asier Gonzalez-Uriarte1 Woosub Shin1 Leah Kemp1 Ryan Patterson-Cross1 Haris Zafeiropoulos1 Hrishikesh Dhondge1 Kim Philipp Jablonski1 Pasi Korhonen1 Marvin Martens1 Tazro Inutano1 Marlene Rezk1 Tong LI1 Anton Nekrutenko1 Jasper Ouwerkerk1 Benjamin Wingfield1 Anna Niehues1 Marie-Dominique Devignes1 Tim Booth1 Samuel Lambert1 Alejandra Escobar1 Katherine Farquharson1 Dennis Dollée1 Lucas Cruz1 Pablo Riesgo Ferreiro1 Felicita Gernhardt1 Kelly Sovacool1 Andrey Prjibelski1 Xiaokang Zhang1 Zavolan Lab1 Mahnoor Zulfiqar1 Veit Schwämmle1 Anton Korobeynikov1 Francisco Camara Ferreira1 Luiz Gadelha1 Vasiliki Panagi1 Josh Moore1 Khaled Jum'ah1 Jorrit Mesman1 Elisabetta Spinazzola1 Agata Kilar1 Sagane Joye-Dind1 Akshay Akshay1 Louise Cordrie1 Davide Gurnari1 Giovanni Macedonio1 David Yuan1 Justin Sonneck1 Daniele Lezzi1 William Eagles1 Zafran Hussain Shah1 Nandan Deshpande1 Michael Hall1 Rafael Terra1 Ian Brennan1 Aishwarya Iyer1 Ashish Bhawel1 Daniel Bauer1 Andrii Neronov1 Amy Curwin1 Arnau Soler Costa1 Thomas Roetzer-Pejrimovsky1 Xiaolong Luo1 Elliott J. Price1 Wudmir Rojas1 David Potesil1 Carlos Classen1 Jordi Rambla1 Timon Schlegel1 Pavel Akhtyamov1 Francesco Messina1 Sebastian Röner1 Ann-Kathrin Dörr1 仕卓 张1 Mahesh Binzer-Panchal1 Martin Pippel1 Jen-Hung Wang1 Fabian Hausmann1 Qiang Ye1 Birgit Rijvers1 Liang Cheng1 Benjamin Istace1 Jean-Marc Aury1 Caroline Belser1 Kieran Atkins1 Tobias Bachmann1 Albert Puiggros1 Cedric Bhihe1 Georgina Díez1 Jens Krumsieck1 Viola Fanfani1 Lorenz Gruber1 Katerina Hanakova1 Wendi Bacon1 Natasha Clarke1 Jiamian He1 Lune Bellec1 Jonas Kasmanas1 Ryo Nozu1 Robin Navest1 Alem Gusinac1 Thomas Ederveen1 Qibo Xu1 Samuel Chaffron1 Gemy Kaithakottil1 David Swarbreck1 Hana Plešingerová1 Marek Cmero1 Won-Min Song1 Henry Schober1 Evangelos Karatzas1 Ryo Mameda1 Alexander Hambley1 Frederick Jaya1 Evan P. Troendle1 Chris Wyatt1 Bryce Fukuda1 Marco Nolden1 Stefan Dvoretskii1 João Cavalcante1 marcin joachimiak1 Sam Haynes1 Sumeet Tiwari1 Jakob Peder Pettersen1 Júlia Ortís Sunyer1 Luis F. Delgado1 Gerard Guillamet1 Christopher Tibbs1 Harpreet Kaur1 Cigdem Sevim Bayrak1 Devon Siemes1 Yuqian Liu1 Jennifer Mattock1 Sudeep Sahadevan1 Ji Wang1 More...

Workflows in EuroScienceGateway48 BioCommons ‘Bring Your Own Data’ Expansion Project39 Biodiversity & ecology workflows28 Interactive Jupyter Notebooks for FAIR and reproducible biomolecular simulation workflows20 Tutorials for BioExcel Building Blocks (BioBB)11 BY-COVID related workflows11 CryoEM Facility Workflows10 scRNAseq processing in galaxy8 COMPSs Workflows from 2024 Tutorial8 IDR7 TSI annotation workflows7 ERGA Assembly Galaxy Long Reads & Hi-C Pipelines (Hifiasm-solo + Purge_Dups + YaHS)7 Freely accessible ready to use global infrastructure and workflows for SARS-CoV-2 monitoring6 ERGA Assembly Galaxy Long Reads & Hi-C Pipelines (Hifiasm-HiC + Purge_Dups + YaHS)6 16S Microbial Analysis with mothur (on Galaxy Australia)6 ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (NextDenovo-HyPo + Purge_Dups + YaHS)6 ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (Flye-HyPo + Purge_Dups + YaHS)6 EC-Earth3 Workflow Collection6 BioExcel Building Blocks (BioBB) Protein MD Setup Tutorials5 EuCanImage FHIR ETL Implementation5 HiFi genome assembly on Galaxy4 Epigenomic workflows4 Vertebrate Genomes Pipelines (VGP) workflows3 CEITEC CryoEM Facility Workflows3 ERGA Assembly Snakemake HiFi & HiC Pipelines3 Genome Evaluation for ERGA-BGE Reports3 Genome Assembly Workflows for ERGA-BGE genomes3 ATLASea3 TronFlow2 IDR searcher2 Sanger Tree of Life Assembly method1 OGC CWL Application Packages1 Australian Structural Biology Computing (ASBC) community collection1 More...

Bioinformatics60 Genomics31 Sequence assembly28 Whole genome sequencing26 Metagenomics24 Biomedical science21 Transcriptomics21 Genetic variation20 Computational biology15 Computer science13 Ecology13 Biodiversity12 Gene expression12 Microbiology12 Workflows11 Machine learning10 Bioimaging9 Population genomics9 Sequence analysis9 Synthetic biology9 Data management8 Data mining8 Imaging8 Proteomics7 Drug discovery6 Metagenomic sequencing6 Oncology6 Virology6 Data visualisation5 Epigenomics5 Gene transcripts5 Metabolomics5 Compound libraries and screening4 Copy number variation4 Genetics4 Microbial ecology4 Physics4 RNA-Seq4 Sequencing4 Computational chemistry3 Data curation and archival3 Data integration and warehousing3 Data quality management3 DNA mutation3 DNA polymorphism3 Environmental sciences3 Gene structure3 Metatranscriptomics3 Molecular interactions, pathways and networks3 Pharmacology3 Preclinical and clinical studies3 Protein interactions3 Rare diseases3 Sample collections3 Single-cell sequencing3 Antimicrobial resistance2 Biochemistry2 Biomolecular simulation2 Cell biology2 Cheminformatics2 Comparative genomics2 Evolutionary biology2 Exome sequencing2 FAIR data2 Functional genomics2 Human genetics2 Infectious disease2 Mapping2 Marine biology2 Molecular genetics2 Plant biology2 Protein interaction experiment2 Protein structure analysis2 Proteins2 Proteomics experiment2 Public health and epidemiology2 Quantitative genetics2 RNA2 Structural variation2 Systems biology2 Taxonomy2 Agricultural science1 Biology1 ChIP-seq1 Cryogenic electron microscopy1 DNA packaging1 Drug development1 Freshwater biology1 Function analysis1 Genotype and phenotype1 Immunoinformatics1 Immunology1 Immunoproteins and antigens1 Light microscopy1 Medical imaging1 Medical informatics1 Medicinal chemistry1 Metabarcoding1 Microbial collection1 Mobile genetic elements1 Multiomics1 Nucleic acid sites, features and motifs1 Ontology and terminology1 Pathology1 Phylogenetics1 Phylogenomics1 Protein binding sites1 Protein folds and structural domains1 Protein variants1 Reproductive health1 Small molecules1 Software engineering1 Statistics and probability1 Structural genomics1 Translational medicine1 More...

Sequencing quality control24 Genome assembly19 Sequence assembly12 Variant calling12 Taxonomic classification11 Gene functional annotation8 Genome annotation8 Annotation7 Expression analysis7 Sequence alignment7 Variant filtering7 Sequence clustering6 Conversion5 Calculation4 De-novo assembly4 Differential gene expression profiling4 Feature extraction4 Gene-set enrichment analysis4 Image analysis4 Sequence read processing4 Visualisation4 Clustering3 Copy number variation detection3 Data filtering3 Data handling3 Data retrieval3 Gene expression profiling3 Haplotype mapping3 Modelling and simulation3 Peptide identification3 Protein interaction network analysis3 Read mapping3 RNA-Seq analysis3 Sequence assembly visualisation3 Sequence trimming3 Standardisation and normalisation3 Transcriptome assembly3 Variant classification3 Alignment2 Antimicrobial resistance prediction2 Correlation2 Dimensionality reduction2 Expression correlation analysis2 Expression profile clustering2 Genetic mapping2 Genome visualisation2 Indel detection2 Label-free quantification2 Labeled quantification2 Prediction and recognition2 Protein identification2 Protein interaction network prediction2 Protein quantification2 Protein-protein interaction analysis2 Scaffolding2 Sequence alignment analysis (site correlation)2 Sequence annotation2 Sequence assembly validation2 SNP annotation2 SNP detection2 Statistical modelling2 Text mining2 Weighted correlation network analysis2 Binding site prediction1 Classification1 Contact map calculation1 Copy number estimation1 Data analysis1 Data formatting1 Data sorting1 Demultiplexing1 Differential protein expression profiling1 DNA back-translation1 DNA barcoding1 Enrichment analysis1 Expression data visualisation1 Feature selection1 Format detection1 Gene prediction1 Generation1 Genome alignment1 Genome analysis1 Genome comparison1 Global alignment1 ID mapping1 Image annotation1 Information retrieval1 Isotope-coded protein label1 k-mer counting1 Local alignment1 Mapping1 Metabolic pathway prediction1 Named-entity and concept recognition1 Network analysis1 Network visualisation1 Nucleic acid property calculation1 Operation1 Pairwise sequence alignment1 Phasing1 Phylogenetic footprinting1 Phylogenetic inference1 Principal component analysis1 Protein function prediction1 Quantification1 Read binning1 Regression analysis1 Relation extraction1 RNA-seq read count analysis1 Sequence contamination filtering1 Sequence cutting1 Sequence distance matrix generation1 Sequence feature detection1 Sequence profile generation1 Single particle analysis1 Statistical calculation1 Statistical inference1 Structural variation detection1 Structure-based sequence alignment1 Text annotation1 Transcription factor binding site prediction1 Validation1 Variant prioritisation1 More...