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540 Workflows visible to you, out of a total of 582
Learn COMPSs with Incrementation and Fibonacci series example
Stable

Name: Incrementation and Fibonacci Access Level: public License Agreement: Apache2 Platform: COMPSs

Description

Brief Overview: Demonstrates COMPSs task parallelism with increment and Fibonacci computations. Helps to understand COMPSs.

Detailed Description:

  1. Performs multiple increments of input values in parallel using COMPSs.
  2. Concurrently calculates Fibonacci numbers using recursive COMPSs tasks.
  3. Demonstrates task synchronization via compss_wait_on.

Execution

...

Type: COMPSs

Creators: Ashish Bhawel, Ashish Bhawel, Uploading this Workflow under the guidance of Raül Sirvent.

Submitter: Ashish Bhawel

Stochastic Gravitational Wave Backgorund (SGWB) tool
Stable

The tool provides a calculation of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.

The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) of ...

Type: Galaxy

Creators: Andrii Neronov, Théo Boyer, Denys Savchenko, Volodymyr Savchenko

Submitter: Denys Savchenko

DOI: 10.48546/workflowhub.workflow.815.2

Use Case 13: Novel Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
Work-in-progress

The input to this workflow is a data matrix of gene expression that was collected from a pediatric patient tumor patient from the KidsFirst Common Fund program [1]. The RNA-seq samples are the columns of the matrix, and the rows are the raw expression gene count for all human coding genes (Table 1). This data matrix is fed into TargetRanger [2] to screen for targets which are highly expressed in the tumor but lowly expressed across most healthy human tissues based on gene expression data collected ...

Type: Unrecognized workflow type

Creators: None

Submitter: Daniel Clarke

Genome-assessment-post-assembly
Stable

Post-genome assembly quality control workflow using Quast, BUSCO, Meryl, Merqury and Fasta Statistics. Updates November 2023. Inputs: reads as fastqsanger.gz (not fastq.gz), and assembly.fasta. New default settings for BUSCO: lineage = eukaryota; for Quast: lineage = eukaryotes, genome = large. Reports assembly stats into a table called metrics.tsv, including selected metrics from Fasta Stats, and read coverage; reports BUSCO versions and dependencies; and displays these tables in the workflow ...

Type: Galaxy

Creators: Gareth Price, Anna Syme, Gareth Price, Anna Syme

Submitters: Johan Gustafsson, Anna Syme

DOI: 10.48546/workflowhub.workflow.403.4

sanger-tol/treeval v1.1.0 - Ancient Aurora
Stable

Cite with Zenodo Nextflow run with conda run with docker ...

Type: Nextflow

Creators: Damon-Lee Pointon, William Eagles, Ying Sims

Submitter: Damon-Lee Pointon

sars-cov-2-pe-illumina-artic-variant-calling/COVID-19-PE-ARTIC-ILLUMINA

COVID-19: variation analysis on ARTIC PE data

The workflow for Illumina-sequenced ampliconic data builds on the RNASeq workflow for paired-end data using the same steps for mapping and variant calling, but adds extra logic for trimming amplicon primer sequences off reads with the ivar package. In addition, this workflow uses ivar also to identify amplicons affected by primer-binding site mutations and, if possible, excludes reads derived from such ...

Type: Galaxy

Creator: Wolfgang Maier

Submitter: WorkflowHub Bot

DOI: 10.48546/workflowhub.workflow.110.7

A workflow demonstrating the 'Run interpolation based on IDW' tool
No description specified

Type: Galaxy

Creators: None

Submitter: Markus Konkol

My COMPSs Fibonacci Series
Stable

Calculates the Fibonacci series up to a specified length.

Type: COMPSs

Creator: Uploading this Workflow under the guidance of Raül Sirvent.

Submitter: Ashish Bhawel

Assembly-Hifi-only-VGP3/main

Contiging Solo w/HiC:

Generate phased assembly based on PacBio Hifi Reads using HiC data from the same individual for phasing.

Inputs

  1. Hifi long reads [fastq]
  2. HiC forward reads (if multiple input files, concatenated in same order as reverse reads) [fastq]
  3. HiC reverse reads (if multiple input files, concatenated in same order as forward reads) [fastq]
  4. K-mer database [meryldb]
  5. Genome profile summary generated by Genomescope [txt]
  6. Name of first assembly
  7. Name of second ...

Type: Galaxy

Creator: Galaxy, VGP

Submitter: WorkflowHub Bot

Scaffolding-HiC-VGP8/main

Scaffolding using HiC data with YAHS.

Type: Galaxy

Creator: VGP, Galaxy

Submitter: WorkflowHub Bot

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