exome-alignment
Version 1

Workflow Type: Common Workflow Language
Stable

Exome Alignment Workflow

Inputs

ID Name Description Type
fastq_files n/a List of paired-end input FASTQ files File[]
reference_fasta n/a Compress FASTA files with the reference genome chromosomes File
readgroup n/a Parsing header which should correlate to FASTQ files string
sample_name n/a Sample name string

Steps

ID Name Description
gunzip
picard_dictionary
cutadapt
bwa_index
samtools_faidx
bwa_mem
samtools_sort
picard_markduplicates

Outputs

ID Name Description Type
sorted_bam n/a Sorted aligned BAM file File
help Creators and Submitter
Activity

Views: 46   Downloads: 0

Created: 19th Nov 2021 at 10:06

Last updated: 19th Nov 2021 at 10:08

Last used: 30th Nov 2021 at 03:44

help Attributions

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Version History

Version 1 Created 19th Nov 2021 at 10:06 by Laura Rodriguez-Navas

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