Dilution Series 15N Labeled Chamydomonas reinhardtii
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Download RO-CrateAn experiment which measured 15N labeled and unlabeled Chamydomonas reinhardtii samples at different ratios.
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Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| cores | CPU cores | Number of CPU cores to use for processing |
|
| inputMzML | MzML input directory | Input directory containing mzML files |
|
| inputPeptideDB | Peptide database file | Input peptide database file |
|
| outputAlignment | Alignment output directory | Output directory for alignment results |
|
| outputAlignmentQuant | Alignment quantification output directory | Output directory for alignment-based quantification |
|
| outputAlignmentStats | Alignment statistics output directory | Output directory for alignment statistics |
|
| outputDB | Database output directory | Output directory for database files |
|
| outputLabeledProt | Labeled protein output directory | Output directory for labeled protein quantification |
|
| outputMzML | MzML conversion output directory | Output directory for mzLite files |
|
| outputPSM | PSM output directory | Output directory for peptide-spectrum match files |
|
| outputPSMStats | PSM statistics output directory | Output directory for PSM statistics |
|
| outputProt | Protein output directory | Output directory for protein identification results |
|
| outputProtDeduced | Deduced protein output directory | Output directory for deduced protein results |
|
| outputQuant | Quantification output directory | Output directory for quantification results |
|
| outputQuantAndProt | Combined quantification and protein output directory | Output directory for combined quantification and protein results |
|
| paramsAlignmentBasedQuant | Alignment-based quantification parameters | Parameter file for alignment-based quantification |
|
| paramsAlignmentBasedQuantStats | Alignment quantification statistics parameters | Parameter file for alignment-based quantification statistics |
|
| paramsDB | Database parameters | Parameter file for database creation |
|
| paramsLabeledProteinQuant | Labeled protein quantification parameters | Parameter file for labeled protein quantification |
|
| paramsMzML | MzML parameters | Parameter file for mzML processing |
|
| paramsPSM | PSM parameters | Parameter file for PSM analysis |
|
| paramsPSMBasedQuant | PSM-based quantification parameters | Parameter file for PSM-based quantification |
|
| paramsPSMStats | PSM statistics parameters | Parameter file for PSM statistics |
|
| paramsProt | Protein inference parameters | Parameter file for protein inference |
|
Steps
| ID | Name | Description |
|---|---|---|
| Workflow | ProteomIQon | The ProteomIQon is a collection of open source computational proteomics tools to build pipelines for the evaluation of MS derived proteomics data written |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| alignment | Alignment results | Feature alignment results across samples |
|
| alignmentQuant | Alignment-based quantification | Quantification results based on feature alignment |
|
| alignmentStats | Alignment statistics | Statistical analysis of alignment-based quantification |
|
| db | Database files | Created database |
|
| labeledProteins | Labeled protein quantification | Labeled protein quantification results |
|
| mzml | mzLite files | Processed mzLite files |
|
| prot | Protein identification results | Protein inference and identification results |
|
| protDeduced | Deduced proteins | Deduced protein results from alignment-based quantification |
|
| psm | Peptide-spectrum matches | Peptide-spectrum match results |
|
| psmstats | PSM statistics | Statistical analysis of peptide-spectrum matches |
|
| quant | Quantification results | PSM-based quantification results |
|
| quantAndProt | Combined quantification and protein results | Combined quantification and protein inference results |
|
Version History
Version 2 (latest) Created 20th Jan 2026 at 16:06 by Caroline Ott
fix ro-crate properties
Frozen
Version-2e3749a0
Version 1 (earliest) Created 12th Jan 2026 at 15:56 by Caroline Ott
Frozen
Version-1
8eb228b
Creators and Submitter
Views: 698 Downloads: 150
Created: 12th Jan 2026 at 15:56
AttributionsNone
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https://orcid.org/0000-0003-1512-9504
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