1: Plant virus detection with kraken2 (SE)
Version 1

Workflow Type: Galaxy
Stable

Metagenomic dataset taxonomic classification using kraken2

Inputs

ID Name Description Type
single_paired single_paired runtime parameter for tool Kraken2 n/a

Steps

ID Name Description
0 Kraken2: taxonomic prediction provide different taxonomic prediction with several false positive. WARNING: consider changing the database toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy0
1 Convert kraken file just re-arrange the column of the tabular file so it can be ready for krona representation toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.2
2 Krona pie chart Improve kraken2 taxonomic result representation in a HTLM report toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0

Outputs

ID Name Description Type
report_output report_output n/a
output output n/a
out_file out_file n/a
output output n/a

Version History

Version 1 (earliest) Created 17th Jun 2021 at 10:14 by johan Rollin

Added/updated 1 files


Open master 9b64afd
help Creators and Submitter
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Activity

Views: 879   Downloads: 14

Created: 17th Jun 2021 at 10:14

Last used: 7th Oct 2022 at 13:01

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Total size: 9.6 KB
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