Workflows
What is a Workflow?Query
Created At
Updated At
Tool
FastQC5
SAMtools5
Stacks5
MultiQC4
Minimap23
QUAST3
Bandage2
BUSCO2
BWA2
Bwa-mem22
fastp2
Racon2
Trimmomatic2
VSEARCH2
Cutadapt1
Flye1
GenomeScope 2.01
HiFiAdapterFilt1
Medaka1
Merqury1
NanoPlot1
PEAR1
picard_samtofastq1
purge_dups1
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Workflow type
Galaxy130
Common Workflow Language51
Nextflow27
Jupyter18
Python15
Snakemake13
Shell Script11
Bpipe5
KNIME5
Workflow Description Language5
PyCOMPSs3
Scipion2
Janis1
R markdown1
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Tag
covid-1942
Assembly21
Alignment15
INDELs13
SNPs13
CWL12
Galaxy12
Genomics12
Nextflow12
workflow12
RNASEQ11
GATK49
Large-genome-assembly9
Metagenomics9
rna9
rna-seq9
variant_calling9
cancer8
Transcriptomics8
Annotation7
scalable7
covid19.galaxyproject.org6
ONT6
PBS6
vgp6
bpipe5
Climate5
groovy5
illumina5
NCI5
pediatric5
Bioinformatics4
copernicus4
FASTQ4
Gadi4
generic4
Retrosynthesis4
SAMTools4
variant calling4
Virology4
WGS4
ARTIC3
BWA3
ChIP3
Classification3
Default-SDR3
DNA3
HiFi3
image processing3
kraken3
MetaDEGalaxy3
mirna prediction3
NCI-Gadi3
Pathway Analysis3
pathway prediction3
protein3
Proteomics3
rare diseases3
scRNA-seq3
STAR3
16S2
Amplicon2
binning2
BROAD2
CellProfiler2
CODEX22
collections2
COMPSs2
cosifer2
differential expression2
DNA-seq2
ExomeDepth2
exploration2
FAIR workflows2
FastQC2
Flashlite2
genome2
GROMACS2
GTN2
Hi-C2
hifiasm2
identification2
iwc2
jupyter2
kallisto2
linkage_map2
manta2
mapping2
metabolic engineering2
Metabolomics2
molecular dynamics2
mpxv2
multi-specimen-input2
MultiQC2
nanopore2
nf-core2
pathway design2
phylogenetics2
phylogenomics2
PyCOMPSs2
QC2
Semantic Network Analysis2
Snakemake2
structural variants2
Synthetic Biology2
Tophat22
TransBioNet2
trinity2
validated-2022-06-292
VARSCAN22
VCF2
WDL2
10X1
18S1
ABR1
abricate1
air-quality1
antimicrobial resistance1
astronomy1
ATACseq1
BackTrackBB1
bacterial-genomics1
BAM1
bash1
BBduk1
bbmap1
Behavioral data1
benchmarking1
BioBB1
Biodiversity1
bioimaging1
Biomedical Ontologies1
blast1
Bootstrapping1
bowtie21
BQSR1
braken1
BUSCO1
BWA-mem1
carveme1
CATH1
Cellranger1
ChIP-seq1
CIRCexplorer21
circrna1
circRNA_finder1
CIRIquant1
cmip61
community-detection1
Community_metrics1
Consensus1
container1
Conversion1
counts1
CUTnRUN1
Darwin core1
data integration1
Data package1
DataOne1
DCC1
DE1
de novo1
DE_NOVO1
DIAMOND1
differential_expression1
DL1
earth observation1
Earthquake Detection1
Ecological metadata language1
Ecology1
eDNA1
Electron microscopy1
emergen_validated1
EML1
eml-annotation1
eosc-nordic1
Epigenomics1
expression1
FAIR1
fastp1
featurecounts1
filtering1
find_circ1
Galaxy-E1
GATK1
GATK31
GEM1
Gene Prioritization1
genetic design1
genome_assembly1
Germline1
GLM1
global assemblies1
Gravitational Waves1
GRIDS1
GRIDSS1
HaplotyeCaller1
HTSeq1
humann21
imaging1
index1
ITS1
Juicer1
LiftOver1
Machine Learning1
map1
MapSplice1
MARS-seq1
mass-spectrometry1
memote1
Merqury1
Meryl1
Metabarcoding1
metagenome1
microbial1
miRanda1
mlxv1
model1
Modeling1
mpvx1
Multi-omics1
Mutect21
name:ONT1
NCI Gadi1
ndvi1
networks1
non-coding1
non-model1
nonspliced1
observation1
openebench1
pangenome1
pangeo1
parallel1
pathogenicity score1
Pfam1
Pipeline1
Presence_absence1
prokka1
Protein domains1
purge_dups1
quality1
quantification1
Quast1
radio interferometry1
reads_selection1
reads_simulation1
referencegenome1
Regulatory Mendelian Mutation score1
RELIANCE1
ReMM1
Report1
RSeQC1
salmon1
sambamba1
SARS-CoV-21
Segemehl1
Segmentation1
Seismic Detection1
Semantic Comparison1
Semantic Interpretation1
sentinel-2 data1
shotgun1
single particle analysis1
singularity1
SKA1
smart-seq 21
Somatic1
SPARK1
Species abundance1
Statistics1
strandedness1
StringTie1
Supernova1
SV1
TAD1
TargetScan1
tcga1
TELLSeq1
topologically associating domains1
Toxicology1
trajectories1
transcriptome1
tumour1
Unicycler1
variant pathogenicity prediction1
variant-analysis1
variation1
Virus1
whole genome sequencing1
Workflows1
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Submitter
Genís Bayarri38
WorkflowHub Bot23
Bert Droesbeke16
Anna Syme16
Laura Rodriguez-Navas13
Ambarish Kumar10
Tracy Chew9
Anne Fouilloux8
Bart Nijsse8
Douglas Lowe6
Cristóbal Gallardo6
Jasper Koehorst5
Sergi Sayols5
Oliver Woolland5
Melchior du Lac4
Willem de Koning4
Johan Gustafsson4
johan Rollin4
Martin Beracochea3
Yvan Le Bras3
Irene Sánchez3
Georgina Samaha3
Juma Bayjan3
Jean-Marie Burel3
Mike Thang3
Anton Nekrutenko3
Jeanette Reinshagen3
Pablo Riesgo Ferreiro3
Stian Soiland-Reyes2
Hervé Ménager2
Luca Pireddu2
Robin Long2
Beatriz Serrano-Solano2
Phil Ewels2
Pavankumar Videm2
Ross Thorne2
Sarah Beecroft2
thodk2
Elida Schneltzer2
Pasi Korhonen2
Miguel Roncoroni2
Kary Ocaña2
Raül Sirvent2
Cristiane Taniguti2
francois moreews1
Camille Juigné1
Laura del Cano1
Ivan Topolsky1
ignacio eguinoa1
Andrea Giachetti1
Michael R. Crusoe1
Matteo Chiara1
Carlos Oscar Sorzano Sanchez1
Paul Brack1
johan Rollin1
Marco De La Pierre1
Julian Uszkoreit1
Helena Rasche1
Qinqin Long1
Dennis Hendriksen1
Valentine Murigneux1
Patrick Durand1
Cyril Noel1
Richard Lupat1
Javier Moldon1
Volodymyr Savchenko1
Johannes Köster1
Bianca Pasat1
Rob Edwards1
Valentin Tilloy1
Michael Roach1
Ryan Patterson-Cross1
Alexander Botzki1
Barry Digby1
panou@fleming.gr Panou1
Haris Zafeiropoulos1
Kaur Alasoo1
Hrishikesh Dhondge1
Marvin Martens1
Marlene Rezk1
Naga Kasinadhuni1
Casper de Visser1
Dennis Dollée1
Saskia Hiltemann1
Adam Tofilski1
Max Schubach1
Luc Cornet1
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Team
BioBB Building Blocks48
Australian BioCommons29
iwc23
GalaxyProject SARS-CoV-221
Galaxy Australia21
UNLOCK13
Sydney Informatics Hub12
usegalaxy-eu11
Galaxy Climate8
IBISBA Workflows7
CWL workflow SARS-CoV-26
MGnify5
IMBforge5
UX trial team5
Integrated and Urban Plant Pathology Laboratory5
iPC: individualizedPaediatricCure5
Specimen Data Refinery5
NanoGalaxy4
Galaxy Training Network3
nf-core3
PNDB3
EJPRD WP13 case-studies workflows3
QCIF Bioinformatics3
CO2MICS Lab3
OME3
EU-Openscreen3
TRON gGmbH3
nf-core viralrecon2
V-Pipe2
SARS-CoV-2 Data Hubs2
EOSC-Life - Demonstrator 7: Rare Diseases2
Pawsey Supercomputing Research Centre2
SeBiMER2
Applied Computational Biology at IEG/HMGU2
TransBioNet2
CRC Cohort2
Workflows Australia2
usegalaxy.be workflows2
Cluster Emergent del Cervell Humà2
Read2Map2
ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2
NMR Workflow1
COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1
Italy-Covid-data-Portal1
EOSC-Life-WP6-Demos1
Genomics Coordination Center1
Janis1
IAA-CSIC1
Snakemake-Workflows1
ODA1
FAME1
CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1
HecatombDevelopment1
OpenEBench1
Bioinformatics and Biostatistics (BIO2 ) Core1
VIB Bioinformatics Core1
Single Cell Unit1
emo-bon1
CINECA1
Toxicology community1
Gyn Department1
Medizinisches Proteom-Center, Medical Bioinformatics1
AGRF BIO1
X-omics1
Air Quality Prediction1
CAPSID1
Seq4AMR1
KircherLab1
Apis-wings-EU1
BCCM_ULC1
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Space
Independent Teams125
BioExcel48
Australian BioCommons40
COVID-19 Biohackathon31
DISSCo - Distributed System of Scientific Collections5
nf-core3
EOSC-Life2
ELIXIR Belgium2
EOSC-Life-WP61
JKU 1
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Creator
Adam Hospital44
Genís Bayarri43
Anna Syme16
Bart Nijsse13
Jasper Koehorst12
Tracy Chew10
Laura Rodriguez-Navas9
Rosemarie Sadsad9
José Mª Fernández6
Georgina Samaha6
Delphine Lariviere6
Douglas Lowe5
Sergi Sayols5
Melchior du Lac4
Martin Beracochea4
Gareth Price4
Oliver Woolland4
Ambarish Kumar3
Juma Bayjan3
Friederike Ehrhart3
Ozan Ozisik3
Jean-Marie Burel3
Patrick Durand3
Laura Leroi3
Laurence Livermore3
Germán Royval3
Cenna Doornbos3
Cali Willet3
Jeanette Reinshagen3
Ivan Topolsky2
Luca Pireddu2
Anne Fouilloux2
Pavankumar Videm2
Alexandre Cormier2
Cyril Noel2
Pierre Cuzin2
Kary Ocaña2
Cristiane Taniguti2
Stian Soiland-Reyes1
Camille Juigné1
Willem de Koning1
Yvan Le Bras1
Coline Royaux1
Pau Andrio1
Michael R. Crusoe1
Matthias Haimel1
Carlos Oscar Sorzano Sanchez1
Paul Brack1
Marco De La Pierre1
Julian Uszkoreit1
Valentine Murigneux1
Richard Lupat1
Mike Thang1
Johannes Köster1
Valentin Tilloy1
Michael Roach1
Elida Schneltzer1
Luiz Gadelha1
Asier Gonzalez-Uriarte1
Wolfgang Maier1
Woosub Shin1
Ryan Patterson-Cross1
Barry Digby1
Haris Zafeiropoulos1
Hrishikesh Dhondge1
Kim Philipp Jablonski1
Pasi Korhonen1
Marvin Martens1
Tazro Inutano1
Marlene Rezk1
Casper de Visser1
Jasper Ouwerkerk1
Anna Niehues1
Marie-Dominique Devignes1
Varsha Kale1
Ekaterina Sakharova1
Katherine Farquharson1
Saskia Hiltemann1
Lucas Cruz1
Pablo Riesgo Ferreiro1
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Collection
Tutorials for BioExcel Building Blocks (BioBB)11
Freely accessible ready to use global infrastructure and workflows for SARS-CoV-2 monitoring5
BioExcel Building Blocks (BioBB) Protein MD Setup Tutorials5
HiFi genome assembly on Galaxy4
BioCommons ‘Bring Your Own Data’ Expansion Project4
IDR3
Vertebrate Genomes Pipelines (VGP) workflows3
TronFlow2
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Topic annotations
Sequence assembly16
Genetic variation9
Population genomics9
Whole genome sequencing8
Metagenomics6
Bioinformatics4
Metagenomic sequencing4
Compound libraries and screening3
Preclinical and clinical studies3
Sequencing3
Transcriptomics3
Virology3
Data quality management2
Exome sequencing2
Gene transcripts2
Genomics2
Quantitative genetics2
Rare diseases2
Sequence analysis2
Biological databases1
Biomedical science1
Data integration and warehousing1
DNA mutation1
DNA packaging1
DNA polymorphism1
Drug discovery1
Epigenomics1
Gene expression1
Metabolomics1
Microbiology1
Protein folds and structural domains1
Proteomics1
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Operation annotations
Sequencing quality control9
Variant calling8
Sequence assembly7
Sequence clustering6
Variant filtering6
Sequence alignment5
De-novo assembly4
Haplotype mapping3
Sequence assembly validation3
Genome assembly2
Indel detection2
SNP detection2
Transcriptome assembly2
Variant classification2
Antimicrobial resistance prediction1
Conversion1
Differential gene expression profiling1
Enrichment analysis1
Expression analysis1
Gene expression profiling1
Genetic mapping1
Genome analysis1
Genome comparison1
ID mapping1
Mapping1
Metabolic pathway prediction1
Phasing1
Sequence assembly visualisation1
Sequence contamination filtering1
Sequence cutting1
Sequence trimming1
Taxonomic classification1
Validation1
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Workflows visible to you, out of a total of 302
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