Workflows

What is a Workflow?

738 Workflows visible to you, out of a total of 793

Sorting and registration of Terahertz ELBE raw data

Helmholtz Scientific Project Workflow Platform

The radiation source ELBE (Electron Linac for beams with high Brilliance and low Emittance) at the Helmholtz Centre Dresden Rossendorf (HZDR) can produce several kinds of secondary radiations. THz radiation is one of them and can be used with a typical pulse frequency of 100 kHz as a stimulation source for elementary low-energy degrees of freedom in matter. To sample the whole THz wave the laser path length is modified by moving specific mirrors. The raw data contains for each mirror position a ...

Type: Uniform Interface to Computing Resources

Creators: None

Submitter: Thomas Gruber

Created: 17th May 2023 at 13:08, Last updated: 17th May 2023 at 13:12

Genome-wide alternative splicing analysis

Galaxy Training Network

Stable

This workflow correspond to the Genome-wide alternative splicing analysis training. It allows to analyze isoform switching by making use of IsoformSwitchAnalyzeR.

Type: Galaxy

Creator: Cristóbal Gallardo

Submitter: Cristóbal Gallardo

DOI: 10.48546/workflowhub.workflow.472.1

Created: 17th May 2023 at 12:21

A workflow for marine Genomic Observatories data analysis

emo-bon

Stable

metaGOflow: A workflow for marine Genomic Observatories' data analysis

logo

An EOSC-Life project

The workflows developed in the framework of this project are based on pipeline-v5 of the MGnify resource.

This branch is a child of the pipeline_5.1 branch that contains all CWL descriptions of the MGnify ...

Type: Common Workflow Language

Creators: Haris Zafeiropoulos, Martin Beracochea

Submitter: Haris Zafeiropoulos

DOI: 10.48546/workflowhub.workflow.384.3

Created: 19th Sep 2022 at 19:00, Last updated: 16th May 2023 at 23:00

ZARP: An automated workflow for processing of RNA-seq data

Zavolan Lab

ZARP

...

Type: Snakemake

Creator: Zavolan Lab

Submitter: Zavolan Lab

DOI: 10.48546/workflowhub.workflow.447.1

Created: 21st Mar 2023 at 13:07, Last updated: 12th May 2023 at 16:33

Galaxy ABC MD Setup tutorial

BioBB Building Blocks

Stable

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building Blocks library ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.299.3

Created: 29th Mar 2022 at 11:43, Last updated: 3rd May 2023 at 14:54

Galaxy Amber Protein Ligand Complex MD Setup tutorial

BioBB Building Blocks

Stable

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.298.3

Created: 25th Mar 2022 at 11:42, Last updated: 3rd May 2023 at 14:52

Galaxy Amber Protein MD Setup tutorial

BioBB Building Blocks

Stable

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building Blocks library ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.297.3

Created: 25th Mar 2022 at 10:10, Last updated: 3rd May 2023 at 14:50

Galaxy Protein-ligand Docking tutorial (Fpocket)

BioBB Building Blocks

Stable

Protein-ligand Docking tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

This tutorials aim to illustrate the process of protein-ligand docking, step by step, using the BioExcel Building Blocks library (biobb). The particular examples used are based on the Mitogen-activated protein kinase 14 (p38-α) protein (PDB code ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.296.3

Created: 24th Mar 2022 at 14:58, Last updated: 3rd May 2023 at 14:48

Galaxy GMX Automatic Ligand Parameterization tutorial

BioBB Building Blocks

Stable

Automatic Ligand parameterization tutorial using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

This tutorial aims to illustrate the process of ligand parameterization for a small molecule, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Sulfasalazine protein (3-letter code SAS), ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.294.3

Created: 24th Mar 2022 at 14:09, Last updated: 3rd May 2023 at 14:44

Galaxy Protein MD Setup tutorial

BioBB Building Blocks

Stable

Protein MD Setup tutorial using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building Blocks library ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.277.3

Created: 14th Mar 2022 at 10:15, Last updated: 3rd May 2023 at 14:41

Workflows

Filters ×

metaGOflow: A workflow for marine Genomic Observatories' data analysis

An EOSC-Life project

ZARP

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Protein-ligand Docking tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Automatic Ligand parameterization tutorial using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Protein MD Setup tutorial using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Filters