Tango: Numerical reconciliation of bacterial fermentation in cheese production Version 0.9.0
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Download RO-CrateComplete workflow for TANGO as reported in Lecomte et al (2024), "Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling", Metabolic Eng. 83:24-38 https://doi.org/10.1016/j.ymben.2024.02.014
- Parameters for individual models are obtained by optimization
- Individual dynamics and community dynamics are simulated
- Figures for the manuscript are assembled from the results.
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Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| community | n/a | n/a |
|
| pure_culture | n/a | n/a |
|
| which_figures | n/a | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| dynamics | n/a | n/a |
| mkdir_figures | n/a | n/a |
| mkdir_models | n/a | n/a |
| mkdir_results | n/a | n/a |
| optimize | n/a | n/a |
| plot_figures | n/a | n/a |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| figures | n/a | n/a |
|
| results | n/a | n/a |
|
Version History
Version 0.9.0 (earliest) Created 3rd May 2024 at 08:03 by David James Sherman
Initial commit
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Version-0.9.0fd9ed7e
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Views: 670 Downloads: 124
Created: 3rd May 2024 at 08:03
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https://orcid.org/0000-0002-2316-1005
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