RNA-RNA interactome analysis using BWA-MEM
Version 1

Workflow Type: Galaxy
Stable

RNA-RNA interactome analysis using ChiRA tools suite. The aligner used is BWA-MEM.

Inputs

ID Name Description Type
1st reference FASTA file 1st reference FASTA file n/a
  • File
2nd reference FASTA file 2nd reference FASTA file n/a
  • File
Annotation GTF file Annotation GTF file n/a
  • File
Genomic FASTA file Genomic FASTA file n/a
  • File
Reads FASTQ file Reads FASTQ file n/a
  • File

Steps

ID Name Description
5 Cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5
6 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
7 ChiRA collapse toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.3+galaxy0
8 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
9 ChiRA map toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.4.3+galaxy0
10 ChiRA merge toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.4.3+galaxy0
11 ChiRA qauntify toolshed.g2.bx.psu.edu/repos/iuc/chira_quantify/chira_quantify/1.4.3+galaxy0
12 ChiRA extract toolshed.g2.bx.psu.edu/repos/iuc/chira_extract/chira_extract/1.4.3+galaxy0
13 Query Tabular toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0

Outputs

ID Name Description Type
_anonymous_output_6 _anonymous_output_6 n/a
  • File
_anonymous_output_7 _anonymous_output_7 n/a
  • File
_anonymous_output_8 _anonymous_output_8 n/a
  • File
_anonymous_output_9 _anonymous_output_9 n/a
  • File
_anonymous_output_10 _anonymous_output_10 n/a
  • File
_anonymous_output_11 _anonymous_output_11 n/a
  • File
_anonymous_output_12 _anonymous_output_12 n/a
  • File
_anonymous_output_13 _anonymous_output_13 n/a
  • File
_anonymous_output_14 _anonymous_output_14 n/a
  • File
_anonymous_output_15 _anonymous_output_15 n/a
  • File
_anonymous_output_16 _anonymous_output_16 n/a
  • File

Version History

Version 1 (earliest) Created 3rd Nov 2020 at 19:46 by Pavankumar Videm

Added/updated 1 files


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Created: 3rd Nov 2020 at 19:46

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