ONT -- Metagenomics-Kraken2-Krona
Version 1

Workflow Type: Galaxy

Metagenomics: taxa classification

Inputs

ID Name Description Type
fast5-Signals-Raw.tar.gz fast5-Signals-Raw.tar.gz n/a n/a
single_paired single_paired runtime parameter for tool Kraken2 n/a

Steps

ID Name Description
0 fast5-Signals-Raw.tar.gz
1 Kraken2 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0
2 Reverse toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0
3 Replace Text toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2
4 Krona pie chart toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1

Outputs

ID Name Description Type
report_output report_output n/a
output output n/a
out_file out_file n/a
outfile outfile n/a
output output n/a
Total size: 7.57 KB
help Creators and Submitter
Creator
  • Milad Miladi
Submitter
License
Activity

Views: 872   Downloads: 46

Created: 5th Aug 2020 at 14:05

Last used: 19th Jan 2022 at 06:04

help Tags
ONT
help Attributions

None

Version History

Version 1 (earliest) Created 5th Aug 2020 at 14:05 by Willem de Koning

Added/updated 1 files


Open master 817f0f9

Related items

Powered by
(v.1.12.0-master)
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH

By continuing to use this site you agree to the use of cookies