Metagenomics: taxa classification
Inputs
ID | Name | Description | Type |
---|---|---|---|
fast5-Signals-Raw.tar.gz | fast5-Signals-Raw.tar.gz | n/a | n/a |
single_paired | single_paired | runtime parameter for tool Kraken2 | n/a |
Steps
ID | Name | Description |
---|---|---|
0 | fast5-Signals-Raw.tar.gz | |
1 | Kraken2 | toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0 |
2 | Reverse | toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0 |
3 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 |
4 | Krona pie chart | toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
report_output | report_output | n/a | tabular |
output | output | n/a | tabular |
out_file | out_file | n/a | tabular |
outfile | outfile | n/a | input |
output | output | n/a | html |

Creator
Submitter
License
Activity
Views: 357 Downloads: 30
Created: 5th Aug 2020 at 14:05
Last used: 18th Jan 2021 at 21:21


None