ONT -- Metagenomics-Kraken2-Krona Version 1
Download RO-Crate
Run on usegalaxy.euMetagenomics: taxa classification
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| fast5-Signals-Raw.tar.gz | fast5-Signals-Raw.tar.gz | n/a | n/a |
| single_paired | single_paired | runtime parameter for tool Kraken2 | n/a |
Steps
| ID | Name | Description |
|---|---|---|
| 0 | fast5-Signals-Raw.tar.gz | |
| 1 | Kraken2 | toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0 |
| 2 | Reverse | toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0 |
| 3 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 |
| 4 | Krona pie chart | toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| report_output | report_output | n/a | tabular |
| output | output | n/a | tabular |
| out_file | out_file | n/a | tabular |
| outfile | outfile | n/a | input |
| output | output | n/a | html |
Creators and SubmitterViews: 793 Downloads: 44
Created: 5th Aug 2020 at 14:05
Last used: 7th Dec 2021 at 04:21
Tags AttributionsNone
Version History
Version 1 Created 5th Aug 2020 at 14:05 by Willem de Koning
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