ONT -- Metagenomics-Kraken2-Krona
Version 1

Download RO Crate

Metagenomics: taxa classification

SEEK ID: https://workflowhub.eu/workflows/53?version=1

Inputs

ID Name Description Type
fast5-Signals-Raw.tar.gz fast5-Signals-Raw.tar.gz n/a n/a
single_paired single_paired runtime parameter for tool Kraken2 n/a

Steps

ID Name Description
0 fast5-Signals-Raw.tar.gz
1 Kraken2 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0
2 Reverse toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0
3 Replace Text toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2
4 Krona pie chart toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1

Outputs

ID Name Description Type
report_output report_output n/a tabular
output output n/a tabular
out_file out_file n/a tabular
outfile outfile n/a input
output output n/a html
help Creators and Submitter
Creator
  • Milad Miladi
Submitter
License
MIT License
Activity

Views: 357   Downloads: 30

Created: 5th Aug 2020 at 14:05

Last used: 18th Jan 2021 at 21:21

help Tags
ONT
help Attributions

None

Related items

NanoGalaxy
No description specified

Space: Independent Teams

Public web page: Not specified

Powered by
 (v.1.11.master)
WorkflowHub | Funding and Programmes | Credits | Privacy Policy
Copyright © 2008 - 2020 The University of Manchester and HITS gGmbH