ONT - Workflow-Wick-et.al.
Version 1

Workflow Type: Galaxy

Genome assembly: Unicycler-based WF for Klebsiella pneumoniae [Wick et al. Microbial genomics 2017]

Inputs

ID Name Description Type
8812159 https://ndownloader.figshare.com/files/8812159 n/a n/a
8811148 https://ndownloader.figshare.com/files/8811148 n/a n/a
8811145 https://ndownloader.figshare.com/files/8811145 n/a n/a

Steps

ID Name Description
0 https://ndownloader.figshare.com/files/8812159
1 https://ndownloader.figshare.com/files/8811148
2 https://ndownloader.figshare.com/files/8811145
3 Create assemblies with Unicycler toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0
4 spades toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.2
5 Create assemblies with Unicycler toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0
6 Create assemblies with Unicycler toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0
7 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
8 Bandage Info toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0
9 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
10 Bandage Info toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0
11 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
12 Bandage Info toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0

Outputs

ID Name Description Type
assembly_graph assembly_graph n/a
assembly assembly n/a
out_contigs out_contigs n/a
out_contig_stats out_contig_stats n/a
out_scaffolds out_scaffolds n/a
out_scaffold_stats out_scaffold_stats n/a
out_log out_log n/a
assembly_graph assembly_graph n/a
assembly assembly n/a
assembly_graph assembly_graph n/a
assembly assembly n/a
outfile outfile n/a
outfile outfile n/a
outfile outfile n/a
outfile outfile n/a
outfile outfile n/a
outfile outfile n/a
Total size: 21.7 KB
help Creators and Submitter
Creator
  • Milad Miladi
Submitter
License
Activity

Views: 713   Downloads: 46

Created: 5th Aug 2020 at 14:03

Last used: 19th Jan 2022 at 03:05

help Tags
ONT
help Attributions

None

Version History

Version 1 (earliest) Created 5th Aug 2020 at 14:03 by Willem de Koning

Added/updated 1 files


Open master 5bb0fa6

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