ONT - Workflow-Wick-et.al.
Version 1

Genome assembly: Unicycler-based WF for Klebsiella pneumoniae [Wick et al. Microbial genomics 2017]

Inputs

ID Name Description Type
https://ndownloader.figshare.com/files/8812159 https://ndownloader.figshare.com/files/8812159 n/a n/a
https://ndownloader.figshare.com/files/8811148 https://ndownloader.figshare.com/files/8811148 n/a n/a
https://ndownloader.figshare.com/files/8811145 https://ndownloader.figshare.com/files/8811145 n/a n/a

Steps

ID Name Description
0 https://ndownloader.figshare.com/files/8812159
1 https://ndownloader.figshare.com/files/8811148
2 https://ndownloader.figshare.com/files/8811145
3 Create assemblies with Unicycler toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0
4 spades toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.2
5 Create assemblies with Unicycler toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0
6 Create assemblies with Unicycler toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0
7 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
8 Bandage Info toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0
9 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
10 Bandage Info toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0
11 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
12 Bandage Info toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0

Outputs

ID Name Description Type
assembly_graph assembly_graph n/a tabular
assembly assembly n/a fasta
out_contigs out_contigs n/a fasta
out_contig_stats out_contig_stats n/a tabular
out_scaffolds out_scaffolds n/a fasta
out_scaffold_stats out_scaffold_stats n/a tabular
out_log out_log n/a txt
assembly_graph assembly_graph n/a tabular
assembly assembly n/a fasta
assembly_graph assembly_graph n/a tabular
assembly assembly n/a fasta
outfile outfile n/a jpg
outfile outfile n/a txt
outfile outfile n/a jpg
outfile outfile n/a txt
outfile outfile n/a jpg
outfile outfile n/a txt
help Creators and Submitter
Creator
  • Milad Miladi
Submitter
License
Activity

Views: 107   Downloads: 12

Created: 5th Aug 2020 at 14:03

Last used: 25th Sep 2020 at 10:42

help Tags
ONT
help Attributions

None

Related items

Powered by
(v.1.11.master)
Copyright © 2008 - 2020 The University of Manchester and HITS gGmbH