Gene similariy anaylsis across physiological systems in IMPC phenotype data
Version 1

Workflow Type: Jupyter

Gene similariy anaylsis across physiological systems in IMPC phenotype data

A Jupyter Notebook tool for analysing user specified genes across the different physiological systems in IMPC data.

Input

The tool takes as input a list of gene ids (MGI ids or Gene Symbol ids). The elemnts in the list could be separated by a comma, semicolumn, tab or newline.

Operation

The program will create an heatmap representing the number of phenotypes and the mp term list for each gene contained in an IMPC physiological system. Using the slider, adjust the treshold to set the minimum count to be displayed in the heatmap.

NB: Genes without phenotypes in any physiological system will not be displayed. Also, the labels of the heatmap will use Gene Symbols independently from the type of id used in the input.

Tool access: Binder

Version History

Version 1 (earliest) Created 27th Apr 2023 at 14:43 by Andrea Furlani

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Created: 27th Apr 2023 at 14:43

Last updated: 16th Jun 2023 at 07:10

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