Presented at the BioExcel Summer School 2021 this lecture shows how to use BioExcel Building Blocks (BioBB).
See also part 1.
Creator: Adam Hospital
Submitter: Stian Soiland-Reyes
Gene similariy anaylsis across IMPC physiological systems
A Jupyter Notebook tool for analysing user specified genes cross the different IMPC physiological systems.
The tool takes as input a list of gene ids (MGI ids or Gene Symbol ids). The elemnts in the list could be separated by a comma, semicolumn, tab or newline.
The program will create an heatmap representing the number of phenotypes and the mp term list for each gene contained in an [IMPC physiological ...
Creators: Andrea Furlani, Philipp Gormanns
Submitter: Andrea Furlani
BridgeDb tutorial: Gene HGNC name to Ensembl identifier
This tutorial explains how to use the BridgeDb identifier mapping service to translate HGNC names to Ensembl identifiers. This step is part of the OpenRiskNet use case to link Adverse Outcome Pathways to WikiPathways.
First we need to load the Python library to allow calls to the BridgeDb REST webservice:
Let's assume we're interested ...
Creators: Marvin Martens, Egon Willighagen
Submitter: Marvin Martens
Description: SSP-based RCP scenario with high radiative forcing by the end of century. Following approximately RCP8.5 global forcing pathway with SSP5 socioeconomic conditions. Concentration-driven. Rationale: the scenario represents the high end of plausible future pathways. SSP5 is the only SSP with emissions high enough to produce the 8.5 W/m2 level of forcing in 2100.
This workflow is answering to the following scientific question:
- Is it worth investing in artificial snowmaking equipment ...
Submitter: Anne Fouilloux