extract SRA + viralRNAspades (PE)
Version 1

Workflow Type: Galaxy
Stable

extract 1 Id from SRA and assume it is PE as input to viralRNASpades.

Steps

ID Name Description
0 Faster Download and Extract Reads in FASTQ toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.11.0+galaxy1
1 rnaviralSPAdes toolshed.g2.bx.psu.edu/repos/iuc/spades_rnaviralspades/spades_rnaviralspades/3.15.4+galaxy2

Outputs

ID Name Description Type
Pair-end data (fasterq-dump) Pair-end data (fasterq-dump) n/a
  • File
Single-end data (fasterq-dump) Single-end data (fasterq-dump) n/a
  • File
Other data (fasterq-dump) Other data (fasterq-dump) n/a
  • File
fasterq-dump log fasterq-dump log n/a
  • File
rnaviralSPAdes on input dataset(s): Contigs rnaviralSPAdes on input dataset(s): Contigs n/a
  • File

Version History

Version 1 (earliest) Created 10th Feb 2023 at 10:05 by phytopat gembloux

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Open master f07b24d
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Views: 2113   Downloads: 129

Created: 10th Feb 2023 at 10:05

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