Workflow Type: Galaxy
Open
Stable
extract 1 Id from SRA and assume it is PE as input to viralRNASpades.
Steps
ID | Name | Description |
---|---|---|
0 | Faster Download and Extract Reads in FASTQ | toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.11.0+galaxy1 |
1 | rnaviralSPAdes | toolshed.g2.bx.psu.edu/repos/iuc/spades_rnaviralspades/spades_rnaviralspades/3.15.4+galaxy2 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Pair-end data (fasterq-dump) | Pair-end data (fasterq-dump) | n/a |
|
Single-end data (fasterq-dump) | Single-end data (fasterq-dump) | n/a |
|
Other data (fasterq-dump) | Other data (fasterq-dump) | n/a |
|
fasterq-dump log | fasterq-dump log | n/a |
|
rnaviralSPAdes on input dataset(s): Contigs | rnaviralSPAdes on input dataset(s): Contigs | n/a |
|
Version History
Version 1 (earliest) Created 10th Feb 2023 at 10:05 by phytopat gembloux
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Created: 10th Feb 2023 at 10:05
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