seurat scRNA-seq
master @ f44e9e1 (latest)

master @ f44e9e1 (latest)

Version 1 (earliest)

Workflow Type: Common Workflow Language

Work-in-progress

No description specified

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SEEK ID: https://workflowhub.eu/workflows/303?version=2

Inputs

ID	Name	Description	Type
running_step	n/a	n/a	int
loadDataR	n/a	n/a	File
barcodes	n/a	n/a	File
features	n/a	n/a	File
matrix	n/a	n/a	File
minCells	n/a	n/a	int
minFeatures	n/a	n/a	int
projectName	n/a	n/a	string
pattern	n/a	n/a	string
filterDataR	n/a	n/a	File
nFeatureRNAmin	n/a	n/a	string
nFeatureRNAmax	n/a	n/a	string
nCountRNAmin	n/a	n/a	string
nCountRNAmax	n/a	n/a	string
percentMTmin	n/a	n/a	string
percentMTmax	n/a	n/a	string
normalizeDataR	n/a	n/a	File
normalization_method	n/a	n/a	string
scale_factor	n/a	n/a	string
margin	n/a	n/a	string
block_size	n/a	n/a	string
verbose	n/a	n/a	string
featureSelectionDataR	n/a	n/a	File
selection_method	n/a	n/a	string
loess_span	n/a	n/a	string
clip_max	n/a	n/a	string
num_bin	n/a	n/a	string
binning_method	n/a	n/a	string
num_features	n/a	n/a	string
scaleDataR	n/a	n/a	File
runPCAR	n/a	n/a	File
findNeighborsR	n/a	n/a	File
neighbors_method	n/a	n/a	string
k	n/a	n/a	string
clusterDataR	n/a	n/a	File
runUmapR	n/a	n/a	File
runTSNER	n/a	n/a	File
find_markersR	n/a	n/a	File

ID	Name	Description	Type
loadDataOutput	n/a	n/a	File
loadDataPlot	n/a	n/a	File
filterDataOutput	n/a	n/a	File
filterDataPlot	n/a	n/a	File
normalizeDataOutput	n/a	n/a	File
findFeaturesOutput	n/a	n/a	File
findFeaturesPlot	n/a	n/a	File
scaleDataOutput	n/a	n/a	File
runPCAOutput	n/a	n/a	File
runPCAPlot1	n/a	n/a	File
runPCAPlot2	n/a	n/a	File
runPCAPlot3	n/a	n/a	File
findNeighborsOutput	n/a	n/a	File
clusterDataOutput	n/a	n/a	File
runUMAPOutput	n/a	n/a	File
runUMAPOutputPlot	n/a	n/a	File
runTSNEOutput	n/a	n/a	File
findMarkersOutput	n/a	n/a	File