Genetic Design Version 1
Visit source
Download RO CrateStable
This workflow converts the top-ranking predicted pathways from the "RetroSynthesis" and "Pathway Analysis" workflows to plasmids intended to be expressed in the specified organism
Steps
| ID | Name | Description |
|---|---|---|
| 0 | rpSBML TAR | |
| 1 | GEM SBML | |
| 2 | Max (UNIPROT) enzymes per reactions | |
| 3 | Top pathways to convert to SBOL | |
| 4 | List of genetic parts | |
| 5 | Extract Taxonomy | extractTaxonomy |
| 6 | Selenzyme | rpSelenzyme |
| 7 | SBML to SBOL | rpSBMLtoSBOL |
| 8 | Parts Genie | PartsGenie |
| 9 | OptDoE | rpOptBioDes |
| 10 | DNA Weaver | DNAWeaver |
| 11 | LCR Genie | LCRGenie |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| output | output | n/a | json |
| output | output | n/a | tar |
| output | output | n/a | xml |
| output | output | n/a | xml |
| output | output | n/a | tar |
| output | output | n/a | tar |
| output | output | n/a | tar |
Creators and Submitter
Views: 383 Downloads: 26
Created: 29th May 2020 at 11:05
Last used: 3rd Mar 2021 at 06:35
AttributionsNone
Version History
Version 1 Created 29th May 2020 at 11:05 by Melchior du Lac
No revision comments
Related items
https://orcid.org/0000-0002-9984-4689
A space managed by WorkflowHub administrators for teams that don't want/need to manage their own space.
Teams: IBISBA Workflows, NMR Workflow, UNLOCK, NanoGalaxy, Galaxy Climate, PNDB, IMBforge, COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource, LBI-RUD, Nick-test-team, usegalaxy-eu, Italy-Covid-data-Portal, UX trial team, Integrated and Urban Plant Pathology Laboratory, SARS-CoV-2 Data Hubs, lmjxteam2, Australian BioCommons, virAnnot pipeline
Web page: Not specified
Workflows from the Industrial Biotechnology Innovation and Synthetic Biology Accelerator (IBISBA 1.0) project, which is funded by the European Union Horizon 2020 program INRAIA-02 under grant agreement 730976.
The workflows also appear on https://hub.ibisba.eu
Space: Independent Teams
Public web page: https://www.ibisba.eu
