Genetic Design
Version 1

Workflow Type: Galaxy
Stable

This workflow converts the top-ranking predicted pathways from the "RetroSynthesis" and "Pathway Analysis" workflows to plasmids intended to be expressed in the specified organism

Inputs

ID Name Description Type
GEM SBML GEM SBML n/a
  • File
List of genetic parts List of genetic parts n/a
  • File
Max (UNIPROT) enzymes per reactions Max (UNIPROT) enzymes per reactions n/a
  • int
Top pathways to convert to SBOL Top pathways to convert to SBOL n/a
  • int
rpSBML TAR rpSBML TAR n/a
  • File

Steps

ID Name Description
5 Extract Taxonomy extractTaxonomy
6 Selenzyme rpSelenzyme
7 SBML to SBOL rpSBMLtoSBOL
8 Parts Genie PartsGenie
9 OptDoE rpOptBioDes
10 DNA Weaver DNAWeaver
11 LCR Genie LCRGenie

Outputs

ID Name Description Type
_anonymous_output_6 _anonymous_output_6 n/a
  • File
_anonymous_output_7 _anonymous_output_7 n/a
  • File
_anonymous_output_8 _anonymous_output_8 n/a
  • File
Pathway SBOLs Pathway SBOLs n/a
  • File
_anonymous_output_9 _anonymous_output_9 n/a
  • File
_anonymous_output_10 _anonymous_output_10 n/a
  • File

Version History

Version 1 (earliest) Created 29th May 2020 at 11:05 by Melchior du Lac

Added/updated 1 files


Open master 778986d
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Created: 29th May 2020 at 11:05

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