Workflow Type: Galaxy
Open
A workflow for performing alignment and phylogeny using protein sequences from the CrusTome database. See crustybase.org/crustome for more information.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Outgroup sequences (AA) | Outgroup sequences (AA) | n/a |
|
Query sequences (AA) | Reference/Query sequences (AA) | n/a |
|
Selected CrusTome sequences (AA) | Selected CrusTome sequences (AA) | n/a |
|
Steps
ID | Name | Description |
---|---|---|
3 | FASTA Merge Files and Filter Unique Sequences | toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0 |
4 | MAFFT | toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.526+galaxy1 |
5 | ClipKIT. Alignment trimming software for phylogenetics. | toolshed.g2.bx.psu.edu/repos/padge/clipkit/clipkit/0.1.0 |
6 | IQ-TREE | toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/2.4.0+galaxy1 |
Version History
Version 1 (earliest) Created 23rd May 2025 at 10:00 by Avani Bhojwani
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Views: 18 Downloads: 3 Runs: 4
Created: 23rd May 2025 at 10:00
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