Compute daily and monthly mean from meteorological station measurements
Version 1

Workflow Type: Galaxy

Stable

This workflow is used to process timeseries from meteorological stations in Finland but can be applied to any timeseries according it follows the same format.

Take a temperature timeseries from any meteorological station. Input format is csv and it must be standardized with 6 columns:

Year (ex: 2021)
month (ex: 1)
day (ex: 15)
Time (ex: 16:56)
Time zone (such as UTC)
Air temperature (degC)

SEEK ID: https://workflowhub.eu/workflows/123?version=1

Inputs

ID	Name	Description	Type
Temperature timeseries (csv)	Temperature timeseries (csv)	Data is usually sampled at a higher frequency (from second to a few minutes). The dataset must contain 6 columns: 1. Year 2.m 3.d 4.Time 5.Time zone (such as UTC) 6. Air temperature (degC)	File

Steps

ID	Name	Description
1	Convert CSV to tabular	csv_to_tabular
2	Merge date columns to YYYYMMDD	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2
3	Text reformatting	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2
4	Prepare daiky means	toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0
5	Daily mean	toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0
6	Monthly mean	toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0
7	Positive only	Filter1
8	Negative only	Filter1
9	Daily climate stripes	toolshed.g2.bx.psu.edu/repos/climate/climate_stripes/climate_stripes/1.0.1
10	Monthly climate stripes	toolshed.g2.bx.psu.edu/repos/climate/climate_stripes/climate_stripes/1.0.1
11	Prepare bar chart	toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3
12	bar char for daily temperatures (C)	barchart_gnuplot

Outputs

ID	Name	Description	Type
daily_mean_timeseries	daily_mean_timeseries	n/a	File
monthly_mean_timeseries	monthly_mean_timeseries	n/a	File
stripes_daily_temperatures	stripes_daily_temperatures	n/a	File
stripes_monthly_temperatures	stripes_monthly_temperatures	n/a	File
daily_barchart	daily_barchart	n/a	File

Version History

Version 1 (earliest) Created 23rd May 2021 at 20:28 by Anne Fouilloux

Added/updated 1 files

Open master f96fc45

Creators and Submitter

Creators

Not specified

Submitter

Anne Fouilloux

License

GNU General Public License 3.0

Activity

Views: 2342 Downloads: 130

Created: 23rd May 2021 at 20:28

Compute daily and monthly mean from meteorological station measurements Version 1