Matteo Chiara
SEEK ID: https://workflowhub.eu/people/79
Location:
Italy
Expertise: Not specified
Tools: Not specified
https://orcid.org/0000-0003-3983-4961 
Team roles
Project administrator
Their tagsRelated items
A space managed by WorkflowHub administrators for teams that don't want/need to manage their own space.
Teams: IBISBA Workflows, NMR Workflow, UNLOCK, NanoGalaxy, Galaxy Climate, PNDB, IMBforge, COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource, LBI-RUD, Nick-test-team, usegalaxy-eu, Italy-Covid-data-Portal, UX trial team, Integrated and Urban Plant Pathology Laboratory, SARS-CoV-2 Data Hubs, lmjxteam2, Australian BioCommons, virAnnot pipeline, Ay Lab, iPC: individualizedPaediatricCure
Web page: Not specified
Collection of workflows and tools to facilitate the assembly of (Italian) SARS-CoV-2 genomes and deposition of relevant data in INDSC sequence databases
Space: Independent Teams
Public web page: Not specified
This WF is based on the official Covid19-Galaxy assembly workflow as available from https://covid19.galaxyproject.org/genomics/2-assembly/ . It has been adapted to suit the needs of the analysis of metagenomics sequencing data. Prior to be submitted to INDSC databases, these data need to be cleaned from contaminant reads, including reads of possible human origin.
The assembly of the SARS-CoV-2 genome is performed using both the Unicycler and the SPAdes assemblers, similar to the original WV.
To
...
Download
