Matteo Chiara
SEEK ID: https://workflowhub.eu/people/79
Location:
Italy
Expertise: Not specified
Tools: Not specified
https://orcid.org/0000-0003-3983-4961 
Team roles
Project administrator
Their tagsRelated items
Collection of workflows and tools to facilitate the assembly of (Italian) SARS-CoV-2 genomes and deposition of relevant data in INDSC sequence databases
Space: Independent Teams
Public web page: Not specified
Work-in-progress
This WF is based on the official Covid19-Galaxy assembly workflow as available from https://covid19.galaxyproject.org/genomics/2-assembly/ . It has been adapted to suit the needs of the analysis of metagenomics sequencing data. Prior to be submitted to INDSC databases, these data need to be cleaned from contaminant reads, including reads of possible human origin.
The assembly of the SARS-CoV-2 genome is performed using both the Unicycler and the SPAdes assemblers, similar to the original WV.
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