Workflows
What is a Workflow?Filters
Preparing and filtering gene and cell annotations files and expression matrix to be passed as input for Monocle
Associated Tutorial
This workflows is part of the tutorial Inferring single cell trajectories with Monocle3, available in the GTN
Thanks to...
Tutorial Author(s): [Julia ...
Workflow based on clustering 3K PBMCs with Scanpy tutorial
Associated Tutorial
This workflows is part of the tutorial Clustering 3K PBMCs with Scanpy, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Workflows for comparison of genes in annotated genomes
Associated Tutorial
This workflows is part of the tutorial Comparative gene analysis in unannotated genomes, available in the GTN
Thanks to...
Workflow Author(s): Anton Nekrutenko
Tutorial Author(s): Anton Nekrutenko ...
Workflow to assess nuclei segmentation by applying different Gaussian filtering values during image pre-processing.
Associated Tutorial
This workflows is part of the tutorial Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy, available in the GTN
Features
- Includes [Galaxy Workflow ...
Trajectory analysis using Monocle3, starting from 3 input files: expression matrix, gene and cell annotations
Associated Tutorial
This workflows is part of the tutorial Inferring single cell trajectories with Monocle3, available in the GTN
Thanks to...
Tutorial Author(s): [Julia ...
Associated Tutorial
This workflows is part of the tutorial GO Enrichment Analysis on Single-Cell RNA-Seq Data, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Bacterial Genome Annotation
Associated Tutorial
This workflows is part of the tutorial Bacterial Genome Annotation, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Bérénice Batut, ...
End-to-End Tissue Microarray Analysis with Galaxy-ME
Associated Tutorial
This workflows is part of the tutorial End-to-End Tissue Microarray Image Analysis with Galaxy-ME, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks
...
Analyse HeLa fluorescence siRNA screen
Associated Tutorial
This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Uses ...
Associated Tutorial
This workflows is part of the tutorial Scanpy Parameter Iterator, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Julia Jakiela
Tutorial Author(s): [Julia ...