Katdetectr
Version 1

Workflow Type: Unrecognized workflow type
Stable

Introduction

katdetectr is an R package for the detection, characterization and visualization of localized hypermutated regions, often referred to as kataegis.

Please see the Application Note (under submission) for additional background, details and performance evaluations of katdetectr.

The general workflow of katdetectr can be summarized as follows:

  1. Import of genomic variants; VCF, MAF or VRanges objects.
  2. Detection of kataegis foci.
  3. Visualization of segmentation and kataegis foci.

Please see the vignette for an overview of the workflow in a step-by-step manner on publicly-available datasets which are included within this package.

Installation

Download katdetectr from BioConductor:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("katdetectr")

Could not render the workflow diagram.

Version History

devel @ 5a6e5d0 (earliest) Created 2nd May 2023 at 12:51 by Daan Hazelaar

update suggests forvigentte build


Frozen devel 5a6e5d0
help Creators and Submitter
Creators
  • Daan Hazelaar
  • Job van Riet
Submitter
Citation
Hazelaar, D., & Van Riet, J. (2023). Katdetectr. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.463.1
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Created: 2nd May 2023 at 12:51

Last updated: 2nd May 2023 at 12:54

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