Mouse phenotype similarity analyis
Version 1

Workflow Type: Jupyter

Phenotype similarity analysis

A Jupyter Notebook for analyzing phenotyping similarities across user specified genes. Phenotypes are retrieved from the MGI resource


The tool takes as input a list of gene ids (MGI ids or Gene Symbol ids). The elemnts in the list could be separated by a comma, semicolumn, tab or newline.


The Notebook will create a table where row and columns names are the Gene Symbols of the input elements and each cell will contain the name of the common phenotypes shared by those genes. Then an interactive heatmap will be displayed, showing also the count of those phenotypes. Using the slider, adjust the treshold to set the minimum count to be displayed in the heatmap.

NB: Genes with only counts below the treshold will be not displayed in the heatmap. Also, the labels of the heatmap will use Gene Symbols independently from the type of id used in the input.

Tool access: Binder

Version History

Version 1 (earliest) Created 27th Apr 2023 at 14:57 by Andrea Furlani

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Open master 4b9513c
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Created: 27th Apr 2023 at 14:57

Last updated: 25th May 2023 at 09:49

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