NMR pipe
Version 1

Workflow Type: Common Workflow Language
Work-in-progress

CWL workflow for NMR spectra Peak Picking The workflow takes as input a series of 2D 1H 15N HSQC NMR spectra and uses nmrpipe tools to convert the spectra in nmrpipe format and performs an automatic peak picking. This test uses a protein MDM2 with different ligands and peptide and generates a peak list with 1H and 15N chemical shift values for each spectrum. The difference among these peak lists can be used to characterize the ligand binding site on the protein.

Click and drag the diagram to pan, double click or use the controls to zoom.

Inputs

ID Name Description Type
workdir_array n/a n/a
  • Directory[]

Steps

ID Name Description
brucker_to_script n/a n/a
script_to_fid n/a n/a
fid_to_pipe n/a n/a
pipe_to_pick n/a n/a

Outputs

ID Name Description Type
final_result n/a n/a
  • File[]

Version History

Version 1 (earliest) Created 22nd Jul 2020 at 11:49 by Andrea Giachetti

Added/updated 1 files


Open master 9fa4f7f
help Creators and Submitter
Creators
Not specified
Submitter
Activity

Views: 2733   Downloads: 978

Created: 22nd Jul 2020 at 11:49

help Tags

This item has not yet been tagged.

help Attributions

None

Total size: 1.24 KB
Powered by
(v.1.16.0-main)
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH