Workflow Type: Galaxy
Stable

Generate possible metabolic routes for the production of a target molecule in an organism of choice

Steps

ID Name Description
0 GEM SBML
1 Target InChI
2 RetroRules retrorules
3 Maximal Pathway Length
4 Sink from SBML rpExtractSink
5 Make Source makeSource
6 RetroPath2.0 retropath2
7 RP2paths rp2paths
8 Pathways to SBML rpReader
9 Complete Reactions rpCofactors

Outputs

ID Name Description Type
output output n/a tar
output output n/a csv
sourceFile sourceFile n/a csv
scope_csv scope_csv n/a csv
rp2paths_pathways rp2paths_pathways n/a csv
rp2paths_compounds rp2paths_compounds n/a tsv
output output n/a tar
output output n/a tar
help Creators and Submitter
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Views: 624   Downloads: 38

Created: 29th May 2020 at 11:08

Last used: 17th Sep 2021 at 12:06

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Version History

Version 1 Created 29th May 2020 at 11:08 by Melchior du Lac

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