RetroSynthesis
Version 1

Workflow Type: Galaxy
Stable

Generate possible metabolic routes for the production of a target molecule in an organism of choice

Inputs

ID Name Description Type
GEM SBML GEM SBML n/a
  • File
Maximal Pathway Length Maximal Pathway Length n/a
  • int
Target InChI Target InChI n/a
  • string

Steps

ID Name Description
2 RetroRules retrorules
4 Sink from SBML rpExtractSink
5 Make Source makeSource
6 RetroPath2.0 retropath2
7 RP2paths rp2paths
8 Pathways to SBML rpReader
9 Complete Reactions rpCofactors

Outputs

ID Name Description Type
_anonymous_output_3 _anonymous_output_3 n/a
  • File
_anonymous_output_5 _anonymous_output_5 n/a
  • File
_anonymous_output_6 _anonymous_output_6 n/a
  • File
_anonymous_output_7 _anonymous_output_7 n/a
  • File
_anonymous_output_8 _anonymous_output_8 n/a
  • File
_anonymous_output_9 _anonymous_output_9 n/a
  • File
_anonymous_output_10 _anonymous_output_10 n/a
  • File
SBML Pathways SBML Pathways n/a
  • File

Version History

Version 1 (earliest) Created 29th May 2020 at 11:08 by Melchior du Lac

Added/updated 1 files


Open master 8e7bb78
help Creators and Submitter
Creator
Submitter
License
Activity

Views: 3368   Downloads: 224

Created: 29th May 2020 at 11:08

help Attributions

None

Total size: 8.23 KB
Powered by
(v.1.15.0)
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH