Stable

Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.

Inputs

ID Name Description Type
gem_sbml gem_sbml runtime parameter for tool FBA n/a
format_type format_type runtime parameter for tool FBA n/a
input_type input_type runtime parameter for tool Rank Pathways n/a

Steps

ID Name Description
0 rpSBML TAR
1 GEM SBML
2 Top Ranking Pathways
3 FBA rpFBA
4 Thermodynamics rpThermo
5 Rank Pathways rpGlobalScore

Outputs

ID Name Description Type
output output n/a tar
output output n/a tar
output output n/a tar
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Views: 484   Downloads: 31

Created: 29th May 2020 at 11:01

Last used: 11th May 2021 at 11:21

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Version 1 Created 29th May 2020 at 11:01 by Melchior du Lac

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