Workflow Type: Galaxy
Stable

Analysis of RNA-seq data starting from BAM and focusing on mRNA, lncRNA and miRNA

Inputs

ID Name Description Type
BAM 1 list BAM 1 list n/a n/a
BAM 2 list BAM 2 list n/a n/a
SAMPLES MATRIX SAMPLES MATRIX n/a n/a

Steps

ID Name Description
0 BAM 1 list
1 BAM 2 list
2 SAMPLES MATRIX
3 List lnctools split_before_diffExp_and_novel_lncRNA (START FROM BAM) d3f11f9fc62015d5
4 List lnctools split_before_diffExp_and_novel_lncRNA (START FROM BAM) d3f11f9fc62015d5
5 Cbind_fileList cbind_fileList
6 Cbind_fileList cbind_fileList
7 Cbind_fileList cbind_fileList
8 Cbind_fileList cbind_fileList
9 Cbind_fileList cbind_fileList
10 Cbind_fileList cbind_fileList
11 mRNA matrix cbind
12 miRNA matrix cbind
13 lncRNA matrix cbind
14 interactions from count matrices! 1d3767f98cd53029

Outputs

ID Name Description Type
output output n/a input
output output n/a input
output output n/a input
output output n/a input
output output n/a input
output output n/a input
out_file1 out_file1 n/a input
out_file1 out_file1 n/a input
out_file1 out_file1 n/a input
help Creators and Submitter
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Submitter
Activity

Views: 48   Downloads: 2

Created: 29th Sep 2021 at 09:25

Last used: 16th Oct 2021 at 16:07

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Version History

Version 1 Created 29th Sep 2021 at 09:25 by Bianca Pasat

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