ASPICov was developed to provide a rapid, reliable and complete analysis of NGS SARS-Cov2 samples to the biologist. This broad application tool allows to process samples from either capture or amplicon strategy and Illumina or Ion Torrent technology. To ensure FAIR data analysis, this Nextflow pipeline follows nf-core guidelines and use Singularity containers.
Availability and Implementation: https://gitlab.com/vtilloy/aspicov
Citation: Valentin Tilloy, Pierre Cuzin, Laura Leroi, Emilie Guérin, Patrick Durand, Sophie Alain ASPICov: An automated pipeline for identification of SARS-Cov2 nucleotidic variants PLoS One 2022 Jan 26;17(1):e0262953: https://pubmed.ncbi.nlm.nih.gov/35081137/
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Created: 24th Sep 2021 at 15:22
Last updated: 31st Jan 2022 at 17:43
Last used: 26th Jun 2022 at 06:01