Workflow Type: Common Workflow Language
Open
Stable
Prostate cancer classification workflow
This workflow segments tissue regions and classifies prostate cancer on H&E whole slide images, using AI. It consists of three steps:
-
low-resolution tissue segmentation to select areas for further processing;
-
high-resolution tissue segmentation to refine borders - it uses step 1 as input;
-
high-resolution normal/cancer classification - it uses step 1 as input.
Click and drag the diagram to pan, double click or use the controls to zoom.
Inputs
ID | Name | Description | Type |
---|---|---|---|
gpu | n/a | n/a |
|
slide | n/a | n/a |
|
tissue-high-batch-size | n/a | n/a |
|
tissue-high-chunk-size | n/a | n/a |
|
tissue-high-filter | n/a | n/a |
|
tissue-high-label | n/a | n/a |
|
tissue-high-level | n/a | n/a |
|
tissue-low-batch-size | n/a | n/a |
|
tissue-low-chunk-size | n/a | n/a |
|
tissue-low-label | n/a | n/a |
|
tissue-low-level | n/a | n/a |
|
tumor-batch-size | n/a | n/a |
|
tumor-chunk-size | n/a | n/a |
|
tumor-filter | n/a | n/a |
|
tumor-label | n/a | n/a |
|
tumor-level | n/a | n/a |
|
Steps
ID | Name | Description |
---|---|---|
classify-tumor | n/a | n/a |
extract-tissue-high | n/a | n/a |
extract-tissue-low | n/a | n/a |
Outputs
ID | Name | Description | Type |
---|---|---|---|
tissue | n/a | n/a |
|
tumor | n/a | n/a |
|
Version History
Version 1 (earliest) Created 2nd Apr 2025 at 15:53 by Simone Leo
No revision comments
Open
master
7d94dbf

Creator
Submitter
License
Activity
Views: 31 Downloads: 5
Created: 2nd Apr 2025 at 15:53

This item has not yet been tagged.

None