Masking repeats with RepeatMasker Version 1
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Run on usegalaxy.euMasking repeats in a genome using RepeatMasker
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Raw genome sequence | #main/Raw genome sequence | The raw (not masked) genome sequence in fasta format |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Red | toolshed.g2.bx.psu.edu/repos/iuc/red/red/2018.09.10+galaxy1 |
| 2 | RepeatMasker | toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.1.5+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| RepeatMasker masked sequence on input dataset(s) | #main/RepeatMasker masked sequence on input dataset(s) | n/a |
|
| RepeatMasker output log on input dataset(s) | #main/RepeatMasker output log on input dataset(s) | n/a |
|
| RepeatMasker repeat catalogue on input dataset(s) | #main/RepeatMasker repeat catalogue on input dataset(s) | n/a |
|
| RepeatMasker repeat statistics on input dataset(s) | #main/RepeatMasker repeat statistics on input dataset(s) | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
Version History
Version 1 (earliest) Created 15th Feb 2024 at 11:38 by Paul De Geest
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Created: 15th Feb 2024 at 11:38
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