Masking repeats with RepeatMasker
Version 1

Workflow Type: Galaxy

Masking repeats in a genome using RepeatMasker

Inputs

ID Name Description Type
Raw genome sequence #main/Raw genome sequence The raw (not masked) genome sequence in fasta format
  • File

Steps

ID Name Description
1 Red toolshed.g2.bx.psu.edu/repos/iuc/red/red/2018.09.10+galaxy1
2 RepeatMasker toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.1.5+galaxy0

Outputs

ID Name Description Type
RepeatMasker masked sequence on input dataset(s) #main/RepeatMasker masked sequence on input dataset(s) n/a
  • File
RepeatMasker output log on input dataset(s) #main/RepeatMasker output log on input dataset(s) n/a
  • File
RepeatMasker repeat catalogue on input dataset(s) #main/RepeatMasker repeat catalogue on input dataset(s) n/a
  • File
RepeatMasker repeat statistics on input dataset(s) #main/RepeatMasker repeat statistics on input dataset(s) n/a
  • File
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File

Version History

Version 1 (earliest) Created 15th Feb 2024 at 11:38 by Paul De Geest

Initial commit


Open master 3c1b74c
help Creators and Submitter
Creator
  • Anthony Bretaudeau
Submitter
Activity

Views: 653

Created: 15th Feb 2024 at 11:38

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Total size: 6.86 KB
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