Workflows

MultiQC37 SAMtools30 fastp22 BWA20 BUSCO18 Cutadapt18 Minimap217 Bowtie 216 BEDTools14 gfastats13 FastQC11 MACS11 Merqury11 BLAST10 BCFtools9 SRA Software Toolkit9 Bandage7 lofreq7 MaBoSS7 PhysiCell7 Bwa-mem26 purge_dups6 snpEff6 GenomeScope 2.05 kraken25 QUAST5 R5 Racon5 RepeatMasker5 Stacks5 TransDecoder5 antiSMASH4 Cufflinks4 Galaxy4 ggplot24 iVar4 QualiMap4 seqtk4 Seurat4 shovill4 StringTie4 taxonomy_krona_chart4 Unicycler4 UniProt4 Vcflib4 cisTEM3 Flye3 gffread3 Gromacs3 HISAT23 MotionCor23 picard_samtofastq3 Scipion3 SPAdes3 STAR3 Trimmomatic3 Variant Effect Predictor (VEP)3 AmberTools2 Biopython2 BRAKER12 bx-python2 CellProfiler2 ChiRA2 DESeq22 FASTX-Toolkit2 FreeBayes2 funannotate2 GATK2 Infernal2 Medaka2 NanoPlot2 nanopolish2 NGSUtils2 Open Babel2 PredPrIn2 PretextView2 RDKit2 RepeatModeler2 RepeatModeler2 SeqCode2 SnpSift2 tophat22 VADR2 vardict2 VarScan2 vcfanno2 vcfutils2 VSEARCH2 Workflow4Metabolomics2 xcms2 XMIPP2 AdapterRemoval1 BamTools1 baredSC1 BBMap1 Bioconductor1 CARNIVAL1 cBioPortal1 ChemicalToolbox1 CITE-seq-Count1 Clustal 1.8 (Clustal W, Clustal X)1 compute_sequence_length1 cuffdiff1 dada21 decoupleR1 Delly21 EGA1 Filtlong1 FLASH1 Galaxy Image Analysis1 GBMatch - GBMPredictor1 GEMINI1 HiFiAdapterFilt1 htseqcount1 iqtree1 JBrowse 21 MAPseq1 miniasm1 miniprot1 MOB-suite1 Metagenomic operational taxonomic units (mOTUs)1 MUMmer1 Nextflow1 nextstrain.org1 ngsReports1 OBITools1 PEAR1 PhysiBoSS1 pilon1 PLINK1 progeny1 Proteinortho1 protexcluder1 pyfastaq1 scikit-image1 SeqSero21 SISTR1 Subread1 SuCOS1 tabix1 Trim Galore1 UCSC Genome Browser Utilities1 varlociraptor1 YaHS1 More...

Galaxy272 Common Workflow Language67 Nextflow56 COMPSs44 Snakemake36 Python33 Jupyter28 Docker14 Shell Script11 Workflow Description Language8 KNIME6 Bpipe5 Scipion5 R markdown3 Autosubmit1 Janis1 Perl1 Pi1 Quarto Markdown1 Rbbt1 Uniform Interface to Computing Resources1 More...

covid-1946 Bioinformatics37 Genomics28 Assembly23 Nextflow23 Metagenomics21 PyCOMPSs18 vgp18 CWL17 Transcriptomics17 workflow17 SNPs16 Alignment15 Galaxy15 Annotation14 INDELs14 RNASEQ13 Reviewed12 rna-seq12 variant calling12 variant_calling12 ERGA11 GATK411 Marenostrum IV11 Python11 rna11 Example10 image processing10 Supercomputer10 Tutorial10 VGP_curated10 cancer9 covid19.galaxyproject.org9 Large-genome-assembly9 Machine Learning9 COMPSs8 dislib8 HiFi8 illumina8 imaging8 ONT8 scRNAseq8 GTN7 Metabolomics7 SARS-CoV-27 scalable7 TSI-annotation7 Workflows7 ChIP6 Climate6 molecular dynamics6 PBS6 Snakemake6 Virology6 ARTIC5 bpipe5 genome-annotation5 groovy5 Laptop5 NCI5 pediatric5 Proteomics5 WGS5 astronomy4 BY-COVID4 copernicus4 FAIR workflows4 FASTQ4 Gadi4 generic4 genome_assembly4 gpu4 helicase4 Hi-C4 HPC4 Java4 jupyter4 mapping4 MS4 name:ASSEMBLY+QC4 name:ONT4 nanopore4 phylogenetics4 rare diseases4 Retrosynthesis4 rna virus4 SAMTools4 Virus4 workflow4metabolomics4 antimicrobial resistance3 Assembly+QC3 binning3 BWA3 Classification3 cryoem3 DataQC3 Default-SDR3 DNA3 Ecology3 EOSC4Cancer3 Germline3 hifiasm3 identification3 kraken3 manta3 MetaDEGalaxy3 mirna prediction3 name:ILLUMINA3 NCI-Gadi3 OME-Zarr3 Pathway Analysis3 pathway prediction3 protein3 QC3 S33 SANBI3 scipion3 scRNA-seq3 spa3 STAR3 structural variants3 #single-cell2 16S2 Alternative splicing2 Amplicon2 ATACseq2 bash2 bioimaging2 blast2 BROAD2 BUSCO2 BWA-mem2 CellProfiler2 Cheminformatics2 ChIP-seq2 CODEX22 collections2 Conversion2 coronavirus2 cosifer2 CUTnRUN2 Deep learning2 dengue2 DE_NOVO2 differential expression2 DNA-seq2 Electron microscopy2 Epigenomics2 ExomeDepth2 exploration2 expression2 FastQC2 Flashlite2 GC-MS2 gene set enrichment analysis2 genome2 Genome assembly2 GROMACS2 GWAS2 HySEA2 iwc2 kallisto2 LC-MS2 linkage_map2 mass-spectrometry2 Matrix Multiplication2 Merqury2 MERS2 Meryl2 metabolic engineering2 metaMS2 metatranscriptomics2 mpxv2 Multi-omics2 multi-specimen-input2 MultiQC2 name:amplicon2 name:ERGA2 name:single-cell2 nf-core2 NSP132 pathway design2 personalized medicine2 phylogenomics2 Pipeline2 Quast2 Semantic Network Analysis2 shotgun2 singularity2 Somatic2 Synthetic Biology2 Tophat22 TransBioNet2 trinity2 Tsunami2 validated-2022-06-292 variant-analysis2 VARSCAN22 VCF2 WDL2 west nile2 whole genome sequencing2 xcms2 zika2 10.3390/microorganisms100202921 10X1 18S1 ABR1 abricate1 air-quality1 alternative-splicing1 AMR1 AMR-detection1 annotsv1 ATAC-seq1 automated workflows1 BackTrackBB1 bacterial-genomics1 BAM1 BBduk1 bbmap1 Behavioral data1 benchmarking1 BGE1 BioBB1 Biodiversity1 bioformats1 bioformats2raw1 Bioimage1 Biomedical Ontologies1 BioStudies1 Bootstrapping1 bowtie21 BQSR1 braken1 carveme1 CATH1 causal inference1 Cellranger1 CIRCexplorer21 circrna1 circRNA_finder1 CIRIquant1 cmip61 common data model1 community-detection1 Community_metrics1 comparative effectiveness1 Compomics1 container1 counts1 Darwin core1 data annotation1 data fusion1 data integration1 Data package1 data retrieval and transformation1 data transformation1 data wrangling1 Databases1 DataOne1 DCC1 DE1 de novo1 DIAMOND1 differential_expression1 directed acyclic graph1 disease outcome prediction1 DL1 dna barcoding1 Domain-Domain interaction1 dRNAseq1 durg response simulation1 earth observation1 Earthquake Detection1 Ecological metadata language1 eDNA1 eFlows4HPC1 emergen_validated1 EML1 eml-annotation1 eosc-nordic1 EZyRB1 FAIR1 fastp1 featurecounts1 file conversion1 filtering1 find_circ1 Galaxy-E1 GATK1 GATK31 GEM1 gene expression correlation1 gene expression data wrangling1 Gene ontology term sets similarity1 Gene Prioritization1 genetic design1 genomic ancestry1 geo database mining1 GLM1 global assemblies1 gnps1 Gravitational Waves1 GRIDS1 GRIDSS1 GUCFG2galaxy1 GUI1 HaplotyeCaller1 hCNV1 HiC1 high-throughput1 high-throughput_sequencing_analysis1 hmdb1 host-pathogen PPIs1 HTSeq1 human1 humann21 Hybrid Workflow1 image file format1 imageJ1 index1 international comparison1 isoform switching1 ITS1 Juicer1 kmeans1 Knime1 Kratos Multiphysics1 LiftOver1 Luigi & Rufus workflow1 MAG1 map1 MapSplice1 MARS-seq1 massbank1 MaxQuant1 memote1 Metabarcoding1 metagenome1 MGE1 microbial1 microscopy1 MIRACUM1 miRanda1 mlxv1 Mobilome1 model1 Modeling1 mpvx1 Multivariate1 Mutect21 name:PROFILING1 ncbi sra1 NCI Gadi1 ndvi1 networks1 NGFF1 NGS1 non-coding1 non-model1 Non-parametric1 nonspliced1 Nord 31 NS31 observation1 OME-TIFF1 openebench1 paired-end1 pangenome1 pangeo1 parallel1 Parsl1 pathogenicity score1 Pathology1 Pathway co-occurrence1 Perl1 Permeability1 Pfam1 polygenic risk score1 polygenic score1 pox1 prediction1 Presence_absence1 Profiling1 prokka1 Proline1 Protein domains1 protein interactin data triplification1 protein interactions database integration1 Protein-Protein Interaction1 Protein-Protein interaction prediction1 proteins network augmentation1 public cancer datasets exploration1 purge_dups1 QTL mapping1 quality1 quantification1 radio interferometry1 rdkit1 reads_selection1 reads_simulation1 Reconstruction1 Reduced Order Modeling1 referencegenome1 Regulatory Mendelian Mutation score1 RELIANCE1 ReMM1 Report1 rice1 RSeQC1 salmon1 sambamba1 scientific publication text mining1 Segemehl1 Segmentation1 Seismic Detection1 Semantic Comparison1 Semantic Interpretation1 sentinel-2 data1 sequence annotation1 sequence search1 SIM1 single particle analysis1 single-end1 SKA1 smart-seq 21 smoove1 snv1 SPARK1 Species abundance1 spectra1 Statistics1 strandedness1 StringTie1 Supernova1 survivor1 SV1 SVD1 synthetic data1 TAD1 TargetScan1 tcga1 TELLSeq1 tiddit1 Tomography1 topologically associating domains1 Toxicology1 trajectories1 Trans-Proteomic1 transcriptome1 tumour1 Unicycler1 urgent computing1 vaccines1 validaiton o protein interaction predictions1 variant1 variant pathogenicity prediction1 variation1 More...

WorkflowHub Bot82 Genís Bayarri70 Raül Sirvent24 Anna Syme23 Bert Droesbeke16 Laura Rodriguez-Navas14 Sarah Williams14 Diego De Panis12 Yvan Le Bras11 Ambarish Kumar10 Tracy Chew9 Cristóbal Gallardo9 Anne Fouilloux8 Bart Nijsse8 Jean-Marie Burel8 Miguel Vazquez8 Paul De Geest8 Douglas Lowe7 Georgina Samaha7 Cristian Tatu7 Yasmmin Martins7 Johan Gustafsson6 Jasper Koehorst5 Sergi Sayols5 Oliver Woolland5 Tom Brown5 Matthieu Muffato5 Melchior du Lac4 Martin Beracochea4 Willem de Koning4 johan Rollin4 Helena Rasche4 Dennis Dollée4 Konstantinos Kyritsis4 Bryan Raubenolt4 Stian Soiland-Reyes3 Peter van Heusden3 Irene Sánchez3 Juma Bayjan3 Mike Thang3 Wolfgang Maier3 Anton Nekrutenko3 Jeanette Reinshagen3 Varsha Kale3 Pablo Riesgo Ferreiro3 Daniel Marchan3 Oliver White3 Hervé Ménager2 Luca Pireddu2 Robin Long2 Beatriz Serrano-Solano2 Phil Ewels2 Pavankumar Videm2 Ross Thorne2 Sarah Beecroft2 Valentine Murigneux2 Volodymyr Savchenko2 Johannes Köster2 thodk2 Elida Schneltzer2 Pasi Korhonen2 Miguel Roncoroni2 Kary Ocaña2 Cristiane Taniguti2 Peter Menzel2 Adam Tofilski2 Tina Tian2 Daan Hazelaar2 Andrea Furlani2 Fabrice Touzain2 Jorge Ejarque2 Rutger Vos2 Nathaniel Matteson2 Fernando Vázquez-Novoa2 Ashish Bhawel2 francois moreews1 Camille Juigné1 Laura del Cano1 Ivan Topolsky1 ignacio eguinoa1 Andrea Giachetti1 Michael R. Crusoe1 Matteo Chiara1 Carlos Oscar Sorzano Sanchez1 Paul Brack1 phytopat gembloux1 johan Rollin1 Marco De La Pierre1 Julian Uszkoreit1 Qinqin Long1 Dennis Hendriksen1 Daphne Wijnbergen1 Patrick Durand1 Cyril Noel1 Richard Lupat1 Javier Moldon1 Bianca Pasat1 Rob Edwards1 Valentin Tilloy1 Michael Roach1 Ryan Patterson-Cross1 Alexander Botzki1 Barry Digby1 panou@fleming.gr Panou1 Haris Zafeiropoulos1 Kaur Alasoo1 Hrishikesh Dhondge1 Marvin Martens1 Marlene Rezk1 Naga Kasinadhuni1 Casper de Visser1 Samuel Lambert1 Ekaterina Sakharova1 Alejandra Escobar1 Saskia Hiltemann1 bugra oezdemir1 Max Schubach1 Luc Cornet1 Felicita Gernhardt1 Nico Trummer1 Ang Guo1 Diego Garrido-Martín1 David James Sherman1 Roderic Guigó1 Bruno P. Kinoshita1 Luca Cozzuto1 Xiaokang Zhang1 Zavolan Lab1 Mahnoor Zulfiqar1 Stevie Pederson1 Jeffrey Detras1 Thomas Gruber1 Marjan Meurisse1 Vasiliki Panagi1 Khaled Jum'ah1 Jorrit Mesman1 Elisabetta Spinazzola1 Rosa M Badia1 Anand Maurya1 Agata Kilar1 Vincent Hervé1 Markus Konkol1 Jessica Gomez-Garrido1 Akshay Akshay1 Davide Gurnari1 David Yuan1 Daniel Clarke1 Justin Sonneck1 Yi Sun1 Damon-Lee Pointon1 Bram Danneels1 Zafran Hussain Shah1 Denys Savchenko1 Magdalena Antczak1 Kateřina Storchmannová1 Michael Hall1 Rafael Terra1 Ziad Al-Bkhetan1 Dominik Lux1 Andrii Neronov1 Michael Lloyd1 Thomas Roetzer-Pejrimovsky1 More...

BioBB Building Blocks80 Intergalactic Workflow Commission (IWC)49 Australian BioCommons43 iwc33 Galaxy Australia28 Workflows and Distributed Computing27 GalaxyProject SARS-CoV-221 QCIF Bioinformatics18 Sydney Informatics Hub16 ERGA Assembly16 usegalaxy-eu14 UNLOCK13 PNDB11 EuroScienceGateway11 Galaxy Training Network10 COMPSs Tutorials10 MGnify8 Galaxy Climate8 OME8 PerMedCoE8 IBISBA Workflows7 HoloFood at MGnify7 yPublish - Bioinfo tools7 CWL workflow SARS-CoV-26 Integrated and Urban Plant Pathology Laboratory6 IMBforge5 UX trial team5 iPC: individualizedPaediatricCure5 Specimen Data Refinery5 Cluster Emergent del Cervell Humà5 eFlows4HPC general5 Biodiversity Genomics Europe (general)5 NanoGalaxy4 EJPRD WP13 case-studies workflows4 Seq4AMR4 Biodata Analysis Group4 Tree of Life Genome Analysis4 Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4 nf-core3 SARS-CoV-2 Data Hubs3 ODA3 CO2MICS Lab3 EU-Openscreen3 TRON gGmbH3 Euro-BioImaging3 SANBI Pathogen Bioinformatics3 Scipion CNB3 NHM Clark group3 nf-core viralrecon2 V-Pipe2 EOSC-Life - Demonstrator 7: Rare Diseases2 Pawsey Supercomputing Research Centre2 SeBiMER2 Snakemake-Workflows2 Applied Computational Biology at IEG/HMGU2 INFRAFRONTIER workflows2 TransBioNet2 CRC Cohort2 Workflows Australia2 Medizinisches Proteom-Center, Medical Bioinformatics2 usegalaxy.be workflows2 Air Quality Prediction2 Read2Map2 ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2 Apis-wings2 TRE-FX2 Workflows for geographic science2 Katdetectr2 ANSES-Ploufragan2 Pillar III: Urgent computing for natural hazards2 ERGA Annotation2 Tree of Life Genome Assembly2 CholGen2 BY-COVID (general)2 Peter Menzel's Team2 NMR Workflow1 COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1 Italy-Covid-data-Portal1 EOSC-Life-WP6-Demos1 EOSC-Life WP31 Genomics Coordination Center1 Janis1 IAA-CSIC1 FAME1 CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1 HecatombDevelopment1 OpenEBench1 Bioinformatics and Biostatistics (BIO2 ) Core1 VIB Bioinformatics Core1 Single Cell Unit1 emo-bon1 CINECA1 Toxicology community1 Gyn Department1 AGRF BIO1 X-omics1 CAPSID1 KircherLab1 BCCM_ULC1 Computational Science at HZDR1 Big data in biomedicine1 MISTIC1 Guigó lab1 Statistical genetics1 Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1 Bioinformatics Unit @ CRG1 BSC-CES1 ELIXIR Proteomics1 Black Ochre Data Labs1 IRRI Bioinformatics Group1 Zavolan Lab1 Metabolomics-Reproducibility1 NGFF Tools1 Bioinformatics workflows for life science1 Helmholtz Scientific Project Workflow Platform1 BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection1 Lake Erken modelling setup1 EOSC-Life WP3 OC Team, cross RI project1 ARA-dev1 Mendel Centre for Plant Genomics and Proteomics1 Metagenomic tools1 Pillar I: Manufacturing1 Polygenic Score Catalog1 MLme: Machine Learning Made Easy1 Dioscuri TDA1 NIH CFDE Playbook Workflow Partnership1 MMV-Lab1 EMBL-CBA1 EBP-Nor1 Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1 Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)1 Chemical Data Lab1 Pangenome database project1 HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1 Building spatio-temporal workflows in Galaxy1 Jackson Laboratory NGS-Ops1 BRAIN - Biomedical Research on Adult Intracranial Neoplasms1 More...

Independent Teams229 BioExcel80 Australian BioCommons70 eFlows4HPC38 COVID-19 Biohackathon31 ERGA18 ELIXIR13 Galaxy10 HoloFood7 Sanger Tree of Life6 DISSCo - Distributed System of Scientific Collections5 Biodiversity Genomics Europe (BGE)5 nf-core3 EOSC-Life3 ELIXIR Belgium2 EOSC-Life-WP61 BeYond-COVID (BY-COVID)1 JKU 1 IRRI-Bioinformatics1 HELIPORT1 Coupled Catchment Lake Modelling1 AquaINFRA1 More...

Adam Hospital76 Genís Bayarri75 Anna Syme23 Bart Nijsse13 Tracy Chew13 Jasper Koehorst12 Diego De Panis12 Yvan Le Bras10 Georgina Samaha10 Laura Rodriguez-Navas9 Rosemarie Sadsad9 Jean-Marie Burel8 Saskia Hiltemann7 Cristian Tatu7 Martin Beracochea6 Douglas Lowe6 José Mª Fernández6 Delphine Lariviere6 Javier Conejero6 Coline Royaux5 Sergi Sayols5 Melchior du Lac4 Gareth Price4 Oliver Woolland4 Cali Willet4 Jorge Ejarque4 Bryan Raubenolt4 Ambarish Kumar3 Juma Bayjan3 Friederike Ehrhart3 Ozan Ozisik3 Patrick Durand3 Laura Leroi3 Laurence Livermore3 Germán Royval3 Cristóbal Gallardo3 Cenna Doornbos3 Jeanette Reinshagen3 Tom Brown3 Konstantinos Kyritsis3 Ivan Topolsky2 Luca Pireddu2 Anne Fouilloux2 Michael R. Crusoe2 Pavankumar Videm2 Julian Uszkoreit2 Valentine Murigneux2 Alexandre Cormier2 Cyril Noel2 Pierre Cuzin2 Mike Thang2 Volodymyr Savchenko2 Philipp Gormanns2 Kary Ocaña2 Raül Sirvent2 Varsha Kale2 Ekaterina Sakharova2 Cristiane Taniguti2 Peter Menzel2 Diego Garrido-Martín2 Roderic Guigó2 Andrea Furlani2 Denys Savchenko2 Ziad Al-Bkhetan2 Stian Soiland-Reyes1 Camille Juigné1 Willem de Koning1 Pau Andrio1 Johan Gustafsson1 Matthias Haimel1 Carlos Oscar Sorzano Sanchez1 Paul Brack1 Sarah Beecroft1 Marco De La Pierre1 Helena Rasche1 Richard Lupat1 Johannes Köster1 Valentin Tilloy1 Michael Roach1 Elida Schneltzer1 Luiz Gadelha1 Asier Gonzalez-Uriarte1 Wolfgang Maier1 Woosub Shin1 Ryan Patterson-Cross1 Anthony Bretaudeau1 Barry Digby1 Haris Zafeiropoulos1 Hrishikesh Dhondge1 Kim Philipp Jablonski1 Pasi Korhonen1 Marvin Martens1 Tazro Inutano1 Marlene Rezk1 Casper de Visser1 Jasper Ouwerkerk1 Benjamin Wingfield1 Anna Niehues1 Marie-Dominique Devignes1 Samuel Lambert1 Alejandra Escobar1 Katherine Farquharson1 Lucas Cruz1 Pablo Riesgo Ferreiro1 Felicita Gernhardt1 Andrey Prjibelski1 Xiaokang Zhang1 Zavolan Lab1 Mahnoor Zulfiqar1 Stevie Pederson1 Veit Schwämmle1 Anton Korobeynikov1 Luiz Gadelha1 Vasiliki Panagi1 Jorrit Mesman1 Elisabetta Spinazzola1 Rosa M Badia1 Agata Kilar1 Jessica Gomez-Garrido1 Sagane Joye-Dind1 Akshay Akshay1 Phuong Doan1 Davide Gurnari1 David Yuan1 Justin Sonneck1 Damon-Lee Pointon1 William Eagles1 Zafran Hussain Shah1 Fernando Vázquez-Novoa1 Nandan Deshpande1 Michael Hall1 Rafael Terra1 Ian Brennan1 Dominik Lux1 Ashish Bhawel1 Andrii Neronov1 Thomas Roetzer-Pejrimovsky1 More...

BioCommons ‘Bring Your Own Data’ Expansion Project39 Interactive Jupyter Notebooks for FAIR and reproducible biomolecular simulation workflows17 Tutorials for BioExcel Building Blocks (BioBB)11 Workflows in EuroScienceGateway10 scRNAseq processing in galaxy8 COMPSs Workflows from 2024 Tutorial8 TSI annotation workflows7 Freely accessible ready to use global infrastructure and workflows for SARS-CoV-2 monitoring6 IDR6 ERGA Assembly Galaxy HiFi & HiC Pipelines (Hifiasm-HiC + Purge_Dups + YaHS)6 16S Microbial Analysis with mothur (on Galaxy Australia)6 ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (NextDenovo-HyPo + Purge_Dups + YaHS)6 ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (Flye-HyPo + Purge_Dups + YaHS)6 BioExcel Building Blocks (BioBB) Protein MD Setup Tutorials5 HiFi genome assembly on Galaxy4 Vertebrate Genomes Pipelines (VGP) workflows3 CEITEC CryoEM Facility Workflows3 ERGA Assembly Snakemake HiFi & HiC Pipelines3 TronFlow2 Sanger Tree of Life Assembly method1 More...

Bioinformatics25 Whole genome sequencing23 Sequence assembly20 Genetic variation15 Metagenomics11 Genomics10 Biomedical science9 Computer science9 Population genomics9 Biodiversity8 Ecology8 Transcriptomics8 Metagenomic sequencing5 Biological databases4 Gene transcripts4 Oncology4 Sequence analysis4 Bioimaging3 Compound libraries and screening3 Data mining3 Drug discovery3 Imaging3 Machine learning3 Preclinical and clinical studies3 Protein interactions3 Sample collections3 Sequencing3 Virology3 Workflows3 Data integration and warehousing2 Data quality management2 DNA mutation2 DNA polymorphism2 Exome sequencing2 Gene expression2 Gene structure2 Genetics2 Protein interaction experiment2 Proteomics2 Quantitative genetics2 Rare diseases2 ChIP-seq1 Copy number variation1 Data submission, annotation and curation1 Data visualisation1 DNA packaging1 Environmental science1 Epigenomics1 Human genetics1 Mapping1 Medical imaging1 Medical informatics1 Metabolomics1 Metatranscriptomics1 Microbial ecology1 Microbiology1 Molecular genetics1 Molecular interactions, pathways and networks1 Ontology and terminology1 Pathology1 Phylogenetics1 Phylogenomics1 Physics1 Protein folds and structural domains1 Protein variants1 Structural genomics1 Structural variation1 More...

Sequencing quality control15 Genome assembly12 Variant calling12 Sequence assembly7 Variant filtering7 Sequence clustering6 Sequence alignment5 Taxonomic classification5 De-novo assembly4 Annotation3 Data retrieval3 Haplotype mapping3 Protein interaction network analysis3 Sequence assembly validation3 Transcriptome assembly3 Variant classification3 Calculation2 Conversion2 Gene-set enrichment analysis2 Genetic mapping2 Indel detection2 Modelling and simulation2 Prediction and recognition2 Protein interaction network prediction2 Scaffolding2 Sequence assembly visualisation2 SNP annotation2 SNP detection2 Analysis1 Antimicrobial resistance prediction1 Classification1 Clustering1 Copy number variation detection1 Correlation1 Data handling1 Differential gene expression profiling1 Dimensionality reduction1 DNA barcoding1 Enrichment analysis1 Expression analysis1 Expression correlation analysis1 Format detection1 Gene expression profiling1 Genome alignment1 Genome analysis1 Genome comparison1 Genome visualisation1 ID mapping1 Image analysis1 Mapping1 Metabolic pathway prediction1 Named-entity and concept recognition1 Network analysis1 Peptide identification1 Phasing1 Protein identification1 Protein-protein interaction analysis1 Relation extraction1 RNA-Seq analysis1 Sequence contamination filtering1 Sequence cutting1 Sequence trimming1 Text annotation1 Text mining1 Transcription factor binding site prediction1 Validation1 Visualisation1 Weighted correlation network analysis1 More...

Stable296 Work-in-progress87 Deprecated2

Passing66 All failing5 Not available4