Workflows

What is a Workflow?
528 Workflows visible to you, out of a total of 559
Work-in-progress

Description: SSP-based RCP scenario with high radiative forcing by the end of century. Following approximately RCP8.5 global forcing pathway with SSP5 socioeconomic conditions. Concentration-driven. Rationale: the scenario represents the high end of plausible future pathways. SSP5 is the only SSP with emissions high enough to produce the 8.5 W/m2 level of forcing in 2100.

This workflow is answering to the following scientific question:

  • Is it worth investing in artificial snowmaking equipment ...

Type: Jupyter

Creators: None

Submitter: Anne Fouilloux

Work-in-progress

Abstract CWL Automatically generated from the Galaxy workflow file: Workflow with Copernicus Essential Climate Variable - select and plot

Type: Galaxy

Creators: None

Submitter: Anne Fouilloux

Stable

The tutorial for this workflow can be found on Galaxy Training Network

Type: Galaxy

Creator: Anne Fouilloux

Submitter: Bert Droesbeke

Stable

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control.

Type: Nextflow

Creators: None

Submitter: Phil Ewels

Work-in-progress

CWL workflow for NMR spectra Peak Picking The workflow takes as input a series of 2D 1H 15N HSQC NMR spectra and uses nmrpipe tools to convert the spectra in nmrpipe format and performs an automatic peak picking. This test uses a protein MDM2 with different ligands and peptide and generates a peak list with 1H and 15N chemical shift values for each spectrum. The difference among these peak lists can be used to characterize the ligand binding site on the protein.

Type: Common Workflow Language

Creators: None

Submitter: Andrea Giachetti

Stable

Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly RNASEQ reads and annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly and annotation of generated transcripts from RNASEQ reads.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Virus genome assembly with Unicycler and Spades, The 2 assemblers works in parallel. The graph visualization is made with Bandage. workflow git repository : https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2/blob/master/Assembly/workflow/assembly-wf-virus.cwl Based on https://github.com/galaxyproject/SARS-CoV-2/blob/master/genomics/2-Assembly/as_wf.png

Type: Common Workflow Language

Creators: None

Submitter: francois moreews

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