Workflows
What is a Workflow?Filters
Single-cell quality control with scater
Associated Tutorial
This workflows is part of the tutorial Single-cell quality control with scater, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Associated Tutorial
This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Till Korten, Leonid Kostrykin
Tutorial Author(s): ...
This workflow uses Braker3 to annotate a genome.
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Braker3, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Associated Tutorial
This workflows is part of the tutorial Understanding Barcodes, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Pre-processing of 10X Single-Cell ATAC-seq Datasets, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Pavankumar Videm
**Tutorial ...
Genome annotation with Maker
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Maker, available in the GTN
Thanks to...
Workflow Author(s): Anthony Bretaudeau, French National Institute for Agriculture, Food, and Environment (INRAE)
Tutorial Author(s): [Anthony ...
Nucleoli segmentation and feature extraction using CellProfiler
Associated Tutorial
This workflows is part of the tutorial Nucleoli segmentation and feature extraction using CellProfiler, available in the GTN
Thanks to...
Tutorial Author(s): Beatriz Serrano-Solano, ...
example cellprofiler pipeline
Associated Tutorial
This workflows is part of the tutorial Object tracking using CellProfiler, available in the GTN
Thanks to...
Tutorial Author(s): Yi Sun, [Beatriz ...
Associated Tutorial
This workflows is part of the tutorial Pre-processing of 10X Single-Cell ATAC-seq Datasets, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Pavankumar Videm
**Tutorial ...
Workflow for this training: https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scrna-case_basic-pipeline/tutorial.html
Associated Tutorial
This workflows is part of the tutorial Filter, plot and explore single-cell RNA-seq data with Scanpy, available in the GTN
Features
- Includes [Galaxy Workflow ...