Workflows

What is a Workflow?
1204 Workflows visible to you, out of a total of 1288

This Workflow takes a dataset collection of single-cell ATAC-seq fragments and performs:

  • preprocessing
  • filtering
  • concatenation
  • dimension reduction
  • batch correction
  • leiden clustering

Associated Tutorial

This workflows is part of the tutorial Multi-sample batch correction with Harmony and SnapATAC2, available in the GTN ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Tree building for "Phylogenetics - Back to basics"

Associated Tutorial

This workflows is part of the tutorial Phylogenetics - Back to basics, available in the GTN

Features

Thanks to...

Workflow Author(s): Helena ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Associated Tutorial

This workflows is part of the tutorial Secondary metabolite discovery, available in the GTN

Thanks to...

Tutorial Author(s): Paul Zierep

[![gtn star logo followed by the word ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Workflow for the first half of the "Bulk RNA Deconvolution with MuSiC" tutorial.

Associated Tutorial

This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Pseudobulk Analysis Workflow for Tutorial

Associated Tutorial

This workflows is part of the tutorial Pseudobulk Analysis with Decoupler and EdgeR, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

This is the workflow for the Clustering 3K PBMCs with Seurat tutorial if you use SCTransform for preprocessing.

Associated Tutorial

This workflows is part of the tutorial Clustering 3K PBMCs with Seurat, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Workflow for the second half of the "Bulk RNA Deconvolution with MuSiC" tutorial.

Implements the "Estimation of cell type proportions with pre-grouping of cell types" section

Associated Tutorial

This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN

Features

  • Includes [Galaxy Workflow ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Refining Genome Annotations with Apollo

Associated Tutorial

This workflows is part of the tutorial Refining Genome Annotations with Apollo (prokaryotes), available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, [Helena ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

This workflow generates from only an EBI SCXA reference the metadata for creating an ESet object

Associated Tutorial

This workflows is part of the tutorial Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution, available in the GTN

Thanks to...

Workflow Author(s): Wendi Bacon, ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Associated Tutorial

This workflows is part of the tutorial Removing the effects of the cell cycle, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

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